SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDH9.9 (Universal genetic code) : 395 aa
 vs  library
 searching gi:3184274 library

    421 residues in     1 sequences
The best scores are:                              s-w
gi|3184274                                         (421)1013

>>gi|3184274                                         (421 aa)
Smith-Waterman score: 1013;   44.175% identity in 412 aa overlap

               10        20        30        40        50        60
MDH9.9 MNGEENSDSIPIDLILEILSRLPAKSITRFHCVSKLWGSMLCRPYFNELFLTISSARPRL
                        .: :: .::..::.:::: :.::.  ::: .:: : :::.: :
gi|318                  ML-RLSSKSVARFRCVSKQWASMFASPYFRKLFQTRSSAKPSL
                                 10        20        30        40  

                    70        80          90       100             
MDH9.9 LFAFSKHG-E----WRFFSSPQPQNPYGKSS--FVATADFHTKFSQN----LN-------
       :::.. .: :     .:::::: .::: :::  .::.:.::.::: .    .:       
gi|318 LFAIADYGIEEDYSMKFFSSPQLENPYEKSSPTLVAAAEFHVKFSPDKLIPINHSYDPRY
             50        60        70        80        90       100  

              110        120       130       140       150         
MDH9.9 --ICNYTSGLVY-FSAMWITKADVICNPSTGHYAMLPKLLLTYGETRSFFLFDPVGKQFK
         : .:.:::.: ..  ....  .::::.::.:..::.   :: .. ::: :::.:::.:
gi|318 FSI-GYASGLIYIYGDRYVARP-LICNPNTGRYVILPNRY-TYRKAYSFFGFDPIGKQYK
             110       120        130       140        150         

     160       170        180       190        200       210       
MDH9.9 VLLMNKINNNETKDIH-ILTLGTRKVRWRKIQQCPLIHI-VSHEWICINGALYYIA-YN-
       .: .    ..  .  : :::::   . ::::. ::. .  .. . :::::.::..:  : 
gi|318 ALSIA-YPSDPGR--HKILTLGDGDLTWRKIK-CPVPRPGIKGDGICINGVLYFLAERNE
     160        170         180        190       200       210     

          220       230       240       250       260              
MDH9.9 ID-DFLGYIVCFDVRSEKFKCLNLNQDCFSERSTKLIYYKGKLGVV----NLK-YA--HG
       .. :..  :::::::::::  ..... :   :   :: :::::...    ..  :   : 
gi|318 LESDYV--IVCFDVRSEKFTYIDVERIC---R---LINYKGKLAMIYWEDDVDIYEINHM
         220         230       240             250       260       

       270                     280       290       300       310   
MDH9.9 GGFPL-K-------------LCMWVLEDVEKQEWTTSVYTLRDEDRVVKVYYDLFIVGIT
       .:  : :             : .:::::::::::.  .::  : :   . .  : :.: :
gi|318 AGKNLDKYLEENLDVDATNELHVWVLEDVEKQEWSKYAYTWTD-DTFFRRH--LSIAGAT
       270       280       290       300       310          320    

           320         330       340       350         360         
MDH9.9 ATGEIVLA-KKKVCK-PFYVFYFNLERNTLLSVEIQGFGE-YQS-CCSVHAFVDHVEDLN
       ..::::.. .: . : :::::::: : :::  :: ::::: ...  :::..::.:::.:.
gi|318 VSGEIVFSIRKYTSKQPFYVFYFNPESNTLQRVETQGFGEAFKAETCSVRTFVNHVENLD
          330       340       350       360       370       380    

     370       380       390                 
MDH9.9 VYAFVEHMKKTYEYDATSISPSEQKL            
       :  . ...:.                            
gi|318 VNDL-KQLKSGHPPLVQPENYCLSDSDSESDGQGDEKR
           390       400       410       420 

Library scan:  0:00:00  total CPU time:  0:00:00