SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDH9.13 (Universal genetic code) : 382 aa
 vs  library
 searching pir::JC2472 library

    383 residues in     1 sequences
The best scores are:                              s-w
pir||JC2472                                        (383) 541

>>pir||JC2472                                        (383 aa)
Smith-Waterman score: 541;   28.747% identity in 407 aa overlap

                   10        20              30          40        
MDH9.1     MAFEEFPPLIADQLHYLLNHSP---DS---IKIANVWSG-NKINP-KILDRFTLVI
           .:.... :...  .  .. ..    :.   ..:... :: ....:    ::: : :
pir||J MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
               10        20        30        40        50        60

       50        60        70        80        90       100        
MDH9.1 PYCLETIKWDVIYNSEYAMDPPDFVFGPDDEDFVPCKCSAIAPDDDQISSLEKALSEWDH
       ::  ::.:::.:.:..:   ::::.:: .: .:.:       :     :.:.. :. :. 
pir||J PYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP------DP-----SALQN-LASWNP
               70        80         90                  100        

      110       120       130       140       150         160      
MDH9.1 EDSTRLLVIIQGLRDQYVAYQRRRVGQVDDDRVKFEISTVLTRK--GIEMQMASGVDKPE
        .   ::.... : .::  .:  :. .  ..:. :: .:.: .   : .:.. .:  : .
pir||J SNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG-KKNN
       110       120       130         140       150       160     

             170        180           190       200       210      
MDH9.1 ---E--VKFAVPLVMDM-NINKMV---VGC-PWKHQQKIYLQVVYPILRKYEAAPSAPRL
          :  ..: . : .:. ::  ..   :.  :   ..   :.: .   .  ::.   :.:
pir||J WTGEFSARFLLKLPVDFSNIPTYLLKDVNEDP--GEDVALLSVSF---EDTEATQVYPKL
          170       180       190         200          210         

        220         230       240       250       260       270    
MDH9.1 KLVSYYDLKSL--FSVEDVKLSPWMDGMCLAEYLPHLEETLERQIHEAVAAIDLRRSFIE
        :    . ..:   :.  .   :   : :: .:.:.. . :  ... .. .   :: .: 
pir||J YLSPRIE-HALGGSSALHIPAFP--GGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA
     220        230       240         250       260       270      

           280         290       300       310       320       330 
MDH9.1 A-LSLNLGRPL-EADPT-FCRKATFLNASGQFTFMVHFFFSTQFPKQQPTLMLQSCQHLN
       : :: ..:  . : :   :  : :.:    .: :.::. .   ::..:::: .::  :..
pir||J AFLS-HFGTGVVEYDAEGFT-KLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFT
        280        290        300       310       320       330    

             340       350        360       370         380  
MDH9.1 QSSVPVKSNLLTEYPWSPRWEVG-RMAERLCDFLTDEAVNFKK--YCNEALLQH
       .:.  . :.   .::.::::. : .::.:   ..   . .:..  . :  :   
pir||J NSG-QLYSQAQKNYPYSPRWD-GNEMAKRAKAYFKTFVPQFQEAAFANGKL   
           340       350        360       370       380      

Library scan:  0:00:00  total CPU time:  0:00:00