Gene organization of MDF20 (86699 bp)
Chromosome V 20-22 Mb   FTP   Reference   Kazusa Status  
Gene organization of MDF20
figure legend

potential protein genes

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MDF20.1
+
7183..8987 5 1 chromosome 4, ESSA I contig fragment No. 1
MDF20.2
+
11493..13278 4 0 chromosome II BAC T08I13 genomic sequence
MDF20.3
-
13817..16194 5 1 polymorphic antigen
MDF20.4
+
17563..19437 5 5 hypothetical protein slr1298
MDF20.5
+
23300..24472 2 2 outward rectifying potassium channel KCO1
MDF20.6
-
36254..38383 1 1 HPBRII-7 protein
MDF20.7
+
43455..47011 11 3 chromosome 4, ESSA I contig fragment No. 7
MDF20.8
+
47629..49075 3 0 pectate lyase
MDF20.9
-
49960..51974 2 4 endosperm specific protein
MDF20.10
-
53526..56015 1 0 chromosome II BAC T01B08 genomic sequence
MDF20.11
+
59523..62295 13 2 cosmid C06A5
MDF20.12
+
63287..65311 1 0 chromosome II BAC T28M21 genomic sequence
MDF20.13
+
68193..70247 1 0 chromosome II BAC T28M21 genomic sequence
MDF20.14
+
73276..75009 1 0 chromosome II BAC T28M21 genomic sequence


potential exons

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MDF20.P1
-
41059..41205 1 0 RLM1 protein
MDF20.P2
+
86438..86635 1 0 2-acetamido-2-deoxy-d-galactose-binding seed lectin II


transcribed regions

identifier direction position Definition of the most similar sequence

MDF20.T1
+
21801..22172 clone 47F10T7
MDF20.T2
+
31747..32031 clone TAP0191; 5' end
MDF20.T3
+
33501..34004 clone 200M6T7
clone 122O1T7
clone 215G22T7
MDF20.T4
-,+
34538..35059 clone TAP0191; 3' end
Lambda-PRL2 cDNA clone 122O1XP 3'
MDF20.T5
-
56383..56787 clone PAP180; 3' end
MDF20.T6
+
62314..62545 Lambda-PRL2 cDNA clone 86A11XP 3'
MDF20.T7
-
70299..70934 CD4-13 cDNA clone E1A7T7
MDF20.T8
-
72310..72603 Lambda-PRL2 cDNA clone 199C9MRP


Reference
Structural Analysis of Arabidopsis thaliana Chromosome 5. IV. Sequence Features of the Regions of 1,456,315 bp Covered by Nineteen Physically assigned P1 and TAC Clones (1998) Shusei Sato, Takakazu Kaneko, Hirokazu Kotani, Yasukazu Nakamura, Erika Asamizu, Nobuyuki Miyajima, and Satoshi Tabata DNA Research, 5, 41-54
o Kazusa Status