SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDA7.12 (Universal genetic code) : 598 aa
 vs  library
 searching atap2239 library

    653 residues in     1 sequences
The best scores are:                              s-w
ATAP2239, 653 bases, 6BF checksum.                 (653) 984

>>ATAP2239, 653 bases, 6BF checksum.                 (653 aa)
Smith-Waterman score: 984;   46.341% identity in 328 aa overlap

ATAP22 MASNLVEMFNAALNWVTMILESPSARVVLFGVPIRGHFFVEGLLGVVIIILLTRKSYKPP
               10        20        30        40        50        60

ATAP22 KRPLTEQEIDELCDEWVPEPLIPPITEDMKHEPPVLESAAGPHTTVNGKDVVNFASANYL
               70        80        90       100       110       120

ATAP22 GLIGHEKLLICLMPGIMYFCIRKIWGRFLWASWILWYNCDEGVHWGIQNGLQLSRSTIVY
              130       140       150       160       170       180

ATAP22 FKHNDMESLRITLEKIMTKYKRSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVI
              190       200       210       220       230       240

ATAP22 LDESNSFGVLGRSGRGLAEHHSVPIEKIDVVTAAMGHALATEGGFCTGNARIIDYQRLSS
              250       260       270       280       290       300

                               10        20        30        40    
MDA7.1                 MIVKLASFLMYMEYIATGREQTGEKLSDSEYIEEEPRRSRIGNL
                                                  :.:    .::   .:..
ATAP22 SGYVFSASLPPYLASAAITAIDVIDQNPDMLVKLKQNVALLWKDAEL---KPR---MGSF
              310       320       330       340          350       

           50        60        70        80        90       100    
MDA7.1 KKKAFSCSTKLTHPLKMRKGKRKIDFQIPLIEDVRDEKEEKLVSKLRQQLLQKDLLPPVH
       ::.  : : .: . .  :. . :. ... .::::.: .: : :. .::.:.  .:::  :
ATAP22 KKR--SSSKNLRYSMTKRRRSSKV-MSVEIIEDVHDAEELKAVDAFRQSLILDELLPEKH
            360       370        380       390       400       410 

          110       120       130       140       150       160    
MDA7.1 DDYHMLLRFLKTMEFKIEKTVTAWEEMLKWRKEFGTDRIIQDFNFKELDEVTRHYPQGYH
       :::::.:::::. .: .:::   : :::.::::::.: ....:.:::.::: ..::::.:
ATAP22 DDYHMMLRFLKARKFDLEKTKQMWTEMLRWRKEFGADTVMEEFDFKEIDEVLKYYPQGHH
             420       430       440       450       460       470 

          170       180       190       200       210       220    
MDA7.1 GVDKDGRPIYIERLGKAHPGKLMEVTTIERYLKYHVQEFERTLQEKLPACSVAAKRRVTT
       ::::.:::.:::::: .   :::.:::..::..:::.:::::.. :.::::.:::...  
ATAP22 GVDKEGRPVYIERLGLVDSTKLMQVTTMDRYVNYHVMEFERTFNVKFPACSIAAKKHIDQ
             480       490       500       510       520       530 

          230       240       250       260       270       280    
MDA7.1 TTTILDVEGLGMKNFTPTAANLLATIAKVDCNYYPETLHRMFIVNAGIGFRSFLWPAAQK
       .::::::.:.:.:::. .: .:.. . ::: . :::.:        :  ..:       :
ATAP22 STTILDVQGVGLKNFNKAARDLITRLQKVDGDNYPEVL--------GNKYQS-------K
             540       550       560               570             

          290       300       310       320       330       340    
MDA7.1 LLDPMTIAKIQPHSSFGYGMLTLVFIAFLSSLYSQLPEFLGGLCKCPNEGGCLRSNKGPW
       ::.   :  :.                      :.::::::: : : ..:::.::.::::
ATAP22 LLE---I--IDE---------------------SELPEFLGGSCTCADNGGCMRSDKGPW
           580                              590       600       610

          350       360       370       380       390       400    
MDA7.1 NDPEIVELVHHMEVNNVPQTTTAPLHVRDYDSTTCTISPKETLKEEPEPEEYYSSTGSRS
       ..:::.. ::.                                                 
ATAP22 KNPEIMKRVHNGDHKCSKGSQAENSGEKTIPEVFAYFELIYIS                 
              620       630       640       650                    

          410       420       430       440       450       460    
MDA7.1 SMHTCIVPPLSDKASTSDGDKFITTVESIESAQSQLLDADTENTFANTSVREGGQILRFG

          470       480       490       500       510       520    
MDA7.1 ALREKINSENIFHLVKILLVFPLKLFVLFGFLLPGYWQRQNTVVVPDSSTNNKVLECFDR

          530       540       550       560       570       580    
MDA7.1 LKKMEKEFTEISRKQVKIPEANEKLLAESLERIKSLELDLDKTKSVLHITLTKQLQITEQ

          590        
MDA7.1 LESQDEEVSPLTLG

Library scan:  0:00:00  total CPU time:  0:00:01