SSEARCH searches a sequence database
using the Smith-Waterman algorithm
version 2.0u54, July. 1996
Please cite:
T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197;
W.R. Pearson (1991) Genomics 11:635-650
>MCA23.16 (Universal genetic code) : 436 aa
vs library
searching gi:1155261 library
436 residues in 1 sequences
The best scores are: s-w
gi|1155261 (436)2812
>>gi|1155261 (436 aa)
Smith-Waterman score: 2812; 99.771% identity in 436 aa overlap
10 20 30 40 50 60
MCA23. MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|115 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN
10 20 30 40 50 60
70 80 90 100 110 120
MCA23. IKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|115 IKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPIN
70 80 90 100 110 120
130 140 150 160 170 180
MCA23. ASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHG
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|115 GSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHG
130 140 150 160 170 180
190 200 210 220 230 240
MCA23. RGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|115 RGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQS
190 200 210 220 230 240
250 260 270 280 290 300
MCA23. DMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|115 DMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTG
250 260 270 280 290 300
310 320 330 340 350 360
MCA23. KYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|115 KYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKV
310 320 330 340 350 360
370 380 390 400 410 420
MCA23. ADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|115 ADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDM
370 380 390 400 410 420
430
MCA23. TAFDSEDGEALDDDSE
::::::::::::::::
gi|115 TAFDSEDGEALDDDSE
430
Library scan: 0:00:00 total CPU time: 0:00:00