SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MCA23.15 (Universal genetic code) : 431 aa
 vs  library
 searching gnl:PID:d1017953 library

    282 residues in     1 sequences
The best scores are:                              s-w
gnl|PID|d1017953                                   (282) 573

>>gnl|PID|d1017953                                   (282 aa)
Smith-Waterman score: 573;   34.706% identity in 340 aa overlap

               10        20        30        40        50        60
MCA23. MATCSLLPPPSFSPRRRFCSFSHNRRSLPSIFSFNKERVSRRVFCSSKENDINRDRNQST

               70        80        90       100       110       120
MCA23. GIQVYGEIERLLTETVKNSQSSSGGSSDWSEVEGAWVLKPRNSKPKMVVHFIGGIFVGAA
                                  .: :. :.::: :   .:  ::::.:: :::.:
gnl|PI                           MEWREISGSWVLVP--PQPIAVVHFLGGAFVGTA
                                         10          20        30  

              130       140       150       160       170          
MCA23. PQLTYRLFLERLAEKDVLVIATPYASGFDHFNIADEVQFKYDRCCRSLQE--EVQD--LP
       :...:: .: .:..   .:.:::... :::  ::  :  ...   . ::.  :.    ::
gnl|PI PNVAYRWLLTELGKAGYVVVATPFVNTFDHQAIARSVLNRFEIILERLQKQGEITTGLLP
             40        50        60        70        80        90  

        180       190       200       210       220       230      
MCA23. SFGIGHSLGSVIHLLIGLNGCECLKLIQLISFFIELVFTSHSGSRYAVQRNGNVFMAFNN
        .:.:::::           :   :: .:      :.     :: : :.: ::...::::
gnl|PI VYGLGHSLG-----------C---KL-HL------LI-----GSLYEVERAGNILVAFNN
            100                                 110       120      

        240       250       260       270       280       290      
MCA23. KVATSPTIRLGAEMTRKQLETLSPPIMKQILPLVEQLPPLYMDLVKGREDFVPKPEETRR
          .. .: .: .... ::. .   ..::.    .::  : .::  . : :.:.::::  
gnl|PI -YPVKQAIPFGEQLAQLQLDKFLTGVQKQL----RQLN-LQVDL--NFE-FTPSPEETNL
         130       140       150            160          170       

        300       310       320       330        340        350    
MCA23. LIRSYYGISRNLLIKFEDDSIDETSILAQVLGVESSISSKL-DMSIRT-LPGDHGLPLQQ
       ::   : . ::::::: .:.::      :.::..  ....  :.     :::.:  :: :
gnl|PI LIAENYRVRRNLLIKFSNDDID------QTLGLRPILNQQTADLVAYCPLPGNHLTPLGQ
       180       190             200       210       220       230 

          360       370        380       390       400       410   
MCA23. ALPDVPPGMAEAVNRGSEFLANI-AVGTPWESMAKEVGGSLGMDSKILRADMSKDLAQLV
          :.   . :.   :.:: . . :::  :                 :. ..:.:: .: 
gnl|PI ---DI---QWET---GQEF-SPLDAVGQ-W-----------------LKNSLSQDLRRLQ
                      240         250                        260   

           420       430  
MCA23. DAITSWMISNMGPKLLRP 
         :  :.            
gnl|PI KEILRWLEPTRFYSGFDNL
           270       280  

Library scan:  0:00:00  total CPU time:  0:00:00