Gene organization of MCA23 (82503 bp)
Chromosome V 18-20 Mb   FTP   Reference   Kazusa Status  
Gene organization of MCA23
figure legend

potential protein genes

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MCA23.1
-
5397..5957 2 5 similar to acidic ribosomal protein p1
MCA23.2
+
7703..8408 3 1 hypothetical protein
MCA23.3
+
8995..11375 13 2 Acetoacetyl-coenzyme A thiolase
MCA23.4
-
11828..13851 11 2 polyphosphoinositide binding protein Ssh1p
MCA23.5
-
17183..19097 2 0 protein kinase (EC 2.7.1.37) 5
MCA23.6
-
20228..22365 9 0 4-nitrophenylphosphatase
MCA23.7
+
22653..24645 11 1 farnesyl diphosphate synthase precursor
MCA23.8
+
28629..29809 2 0 NIPP-1, nuclear inhibitor of protein phosphatase-1
MCA23.9
+
31648..33356 2 0 hypothetical protein
MCA23.10
-
33805..35222 2 0 pyrophosphate--fructose 6-phosphate 1-phosphotransferase (PFK)
MCA23.11
+
37551..39972 2 0 non-LTR retrotransposon reverse transcriptase-like protein
MCA23.12
+
43738..49383 22 3 kinesin-like protein KIF4
MCA23.13
+
52721..55288 6 3 adenylate kinase, chloroplast (ATP-AMP transphosphorylase)
MCA23.14
-
56039..58291 1 0 CRINKLY4 precursor
MCA23.15
+
58889..61540 10 1 hypothetical protein
MCA23.16
-
63791..65098 1 6 eukaryotic release factor 1 homolog
MCA23.17
+
74824..78998 8 0 respiratory burst oxidase protein D
MCA23.18
-
80694..81254 1 0 hypothetical protein


potential exons

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MCA23.P1
+
28167..28394 3 0 farnesyl pyrophosphate synthetase(dimethylallyltransferase /geranyltranstransferase) [pseudo]
MCA23.P2
-
41713..41820 1 0 putative protein


transcribed regions

identifier direction position Definition of the most similar sequence

MCA23.T1
+
4145..4580 Lambda-PRL2 cDNA clone 220I2T7
Lambda-PRL2 cDNA clone 170D20T7
Lambda-PRL2 cDNA clone 220I1T7 3'
MCA23.T2
+,-
26415..27906 clone VBVSC04
Lambda-PRL2 cDNA clone 162K19T7
clone VBVSC04
Lambda-PRL2 cDNA clone 162K19XP 3'
MCA23.T3
+,-
66005..67859 clone TAI383; 5' end; Similar toNADH dehydrogenase ; Bos taurus
Lambda-PRL2 cDNA clone 156G19T7
clone TASG053, 3' end
Lambda-PRL2 cDNA clone 168G5T7
Lambda-PRL2 cDNA clone 156G19XP 3'


Reference
Structural Analysis of Arabidopsis thaliana Chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones (1998) Erika Asamizu, Shusei Sato, Takakazu Kaneko, Yasukazu Nakamura, Hirokazu Kotani, Nobuyuki Miyajima, and Satoshi Tabata DNA Research, 5, 379-391
o Kazusa Status