SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K9I9.9 (Universal genetic code) : 299 aa
 vs  library
 searching pcu67132 library

    307 residues in     1 sequences
The best scores are:                              s-w
PCU67132, 307 bases, 1B63 checksum.                (307) 488

>>PCU67132, 307 bases, 1B63 checksum.                (307 aa)
Smith-Waterman score: 488;   35.197% identity in 304 aa overlap

                          10        20        30        40         
K9I9.9            MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDL
                  ::  ::::: ::: :::::: ::: :::.::: : .:.  :  :::.::
PCU671 MIQNQKVDNRRMGNHKQKWTAEEEEALKAGVKKHGMGKWKTILVDPDFATALTHRSNIDL
               10        20        30        40        50        60

      50           60         70                80             90  
K9I9.9 KDKWRNISV---TALWGSRKKAK-LALKR----TPPG----TKQD----DNN-TALTIVA
       ::::::...   ::   :. :.  :..       : .    : :.    .:. :: . :.
PCU671 KDKWRNLGISSSTAAQVSKDKSPVLSITNGSAAIPIAQTAITAQNAITAQNTVTAQNTVT
               70        80        90       100       110       120

              100          110       120         130       140     
K9I9.9 LTN--DDERAKPTSP---GGSGGGSPRTCASKRSITS--LDKIIFEAITNLRELRGSDRT
         :    ..:. :     ... ..::.: :.  .: .    ..:::::.. .. ::.: .
PCU671 AQNAATAQKASTTVALVDANAISSSPKTPANAVTIPTKRYYSLIFEAISSAKDPRGADFN
              130       140       150       160       170       180

         150       160       170       180         190        200  
K9I9.9 SIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLVKIKHKYRF--SSNFIPAGARQK-A-P
       .:  .::.. ..: :..: ..  ...:. .  : :.......  :.. ::.  ::. : :
PCU671 TIATFIEQKNEVPHNFRRALSSLVRRLTMQKKLEKVEQRFKIKNSGTRIPT-PRQRDAKP
              190       200       210       220       230          

             210           220        230       240       250      
K9I9.9 QLFLEGNNKK----DPTKPEENGANSLTKFRV-DGELYMIKGMTAQEAAEAAARAVAE-A
            :...:    ::.  :  :: :... :. :.: .  :. .: ::.. . . .:: :
PCU671 -----GTSRKSVLLDPATLE--GAVSIASERLADAE-H--KSCVAIEAVKES-ENIAELA
          240       250         260          270       280         

         260          270       280       290         
K9I9.9 EFAITEAE---QAAKEAERAEAEAEAAQIFAKAAMKALKFRIRNHPW
       :    :::   . ::                                
PCU671 E----EAESMLEIAKGIWEQCHL                        
          290       300                               

Library scan:  0:00:00  total CPU time:  0:00:00