SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K9D7.9 (Universal genetic code) : 713 aa
 vs  library
 searching gi:393194 library

    285 residues in     1 sequences
The best scores are:                              s-w
gi|393194                                          (285) 243

>>gi|393194                                          (285 aa)
Smith-Waterman score: 243;   29.758% identity in 289 aa overlap

               10        20        30        40        50        60
K9D7.9 MGDGDEQSKELGGVSSSSRRCSSGTAGAANAEARMKFAAVDAITELVWSPSNGLSLRCAD
                                                           : ... .:
gi|393                               MNRILSVSFYLFFLYLYIYKTYG-KVKNTD
                                             10        20          

                  70          80          90       100       110   
K9D7.9 --IS-FTGKAKLLSPNFFD--IGLTNMA--IHSNSTSIEDQEDHVDVELRNRDQVNQAMI
         :: . :    :  .:..   :  :    .. .. . .:.:.: . :  . :. :. ..
gi|393 QEISNIYGTNYYLRNGFLNGKNGKGNKYEDLQEEGEGENDDEEHSNSEESDNDEENEIIV
      30        40        50        60        70        80         

             120       130        140       150       160          
K9D7.9 G--GSVEDMKPEMVEDKVETNDDI-KNEEAGCSKRSSDSPKAMEGETRDLLVNEQL-RME
       :  :: :  :    :. . .:.   .::::: ....... ::  : ...   ::.    :
gi|393 GQDGSNE--KAGSNEE-AGSNEKAGSNEEAGSNEKAGSNEKA--GSNEEAGSNEEAGSNE
      90         100        110       120         130       140    

     170          180         190       200       210          220 
K9D7.9 SAGSQEE-G--DKA-HN-RVDRLESMDENNLATLAVVACEGKGDYLPEGEAGPS---GSY
        :::.:: :  .::  : ..   :.   :. :     . :  :.   : ::: .   :: 
gi|393 EAGSNEEAGSNEKAGSNEKAGSNEKAGSNEEAG----SNEKAGSN--E-EAGSNEKAGS-
          150       160       170           180          190       

             230       240              250          260       270 
K9D7.9 RRREKAKGKEKALSDENFGGD---GEDED----EESFGSVESCNS---AGLLSRGKKRPG
          ::: ..::: :.:. :..   : .:.    ::. :: :  .:   ::  ..:..  :
gi|393 --NEKAGSNEKAGSNEEAGSNEKAGSNEEAGSNEEA-GSNEEAGSNEEAGS-NEGSE-AG
          200       210       220       230        240         250 

             280       290         300       310       320         
K9D7.9 FEEQLIFGSKRLKTLNQECLG--STSKLKQDSSFMNWISNMTKGIWKGNEEDNSPFVALT
        :     : :   : .    :  : .: :. .:.:: . .:                   
gi|393 TE-----GPK--GTGGPGSGGEHSHNKKKSKKSIMNMLIGM                   
                    260       270       280                        

     330       340       350       360       370       380         
K9D7.9 TTSNANGHGQVNAIVDQQQLSPCCVKENSGCRNTGFQSFFQSIYCPKKQSQDVVDMDFPN

     390       400       410       420       430       440         
K9D7.9 DVNAAPLQELPWIPEHCDISKGDDLSSSGNEIGPVAEPNISSGKVVFNQTSKTQSSENKR

     450       460       470       480       490       500         
K9D7.9 EDKEPNISLMSLSKSKPNEEPKTCGEADGKVSPCLTNRNSGLKSLWISRFSSKGSFPQKK

     510       520       530       540       550       560         
K9D7.9 ASETAKEANASASDAAKTRDSRKMLADKNVIRPSISSVDGPDKPDTVLPIVSSMRIESSE

     570       580       590       600       610       620         
K9D7.9 AMASLFARRLEAMKSIMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLV

     630       640       650       660       670       680         
K9D7.9 QNISVRNGREEASSLCIRCFQLSHWAATCPNAPLYGSGAEGRAMKNALASTSGMKLPISG

     690       700       710   
K9D7.9 FTDVPRAVFDAVQVLRLSRTDVLK

Library scan:  0:00:00  total CPU time:  0:00:00