SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K9D7.11 (Universal genetic code) : 247 aa
 vs  library
 searching gi:1420924 library

    685 residues in     1 sequences
The best scores are:                              s-w
gi|1420924                                         (685) 226

>>gi|1420924                                         (685 aa)
Smith-Waterman score: 226;   25.912% identity in 274 aa overlap

gi|142 MAAGGRGEAAQKALQSVAQSTGWTYSLLWRLCPRQGALVWAEGYYNGAIRTRKTTMTTVR
               10        20        30        40        50        60

gi|142 QPAGAEDAGDEETAPRRSRQLKELYDSLAAGEAAYDGGGGVGGPQQQQQAAVVPPPRRPA
               70        80        90       100       110       120

gi|142 AALAPEDLTETEWFYLMCASYCFPPAVGLPGEAFVRRAHVWLCGANKADSKVFSRAILAR
              130       140       150       160       170       180

gi|142 SAGIQTVACIPVDDGVLEIGTTEKVEEDIFLIQHVRNIFVDQHGAHIMPTTLSGYSTSTP
              190       200       210       220       230       240

gi|142 TTQLNHQPFQTKTGISLNLGDERNSEMEDDDDDGRIDLENNTENDSTRRHLPQDASAGNE
              250       260       270       280       290       300

gi|142 LETLNAESSGPMLIANLTAQDEYGQLHRFLSVDLSSKYLQSPGAEDQAAVAENAHYIETV
              310       320       330       340       350       360

                                 10                   20           
K9D7.1                   MDNFFLGLSCQEENN-F--WD--------LIVADISGDR---
                             .:.::   .:. :  :.        ...:. . .:   
gi|142 LRILRFNACRQTQAASSNIAKTYLALS---KNSPFSRWNWKRKGISSMMIAEGTPQRMLK
              370       380          390       400       410       

       30          40        50        60        70        80      
K9D7.1 SV--SVPIRSAFRSYMKDTELRMMSPKISSSKVNVKKRMVNLLRKNWEEKKNTVAPEK-E
       ::  ..:  :. ::. .  :..  ::.  ..  .  .:           ... : : . :
gi|142 SVLLGAPSSSSHRSH-RG-EVQSSSPEPRGDDGEGTSR----------SRRGPV-PSQTE
       420       430         440       450                  460    

          90       100       110       120       130       140     
K9D7.1 RSRRHMLKERTRREKQKQSYLALHSLLPFATKNDKNSIVEKAVDEIAKLQRLKKEL-VRR
        :  :.:::: :::: ....  :.::.::.:: :. ::.  ... . .:.:  .::  ::
gi|142 LSASHVLKERRRREKLNEGFAMLRSLVPFVTKMDRASILGDTIEYVKQLRRRIQELESRR
          470       480       490       500       510       520    

            150         160       170       180        190         
K9D7.1 IKVI--EEKS--AKDGHDEMSETKVRVNLKEPLSGLDSMLEALHYL-KSMGTKLKTVHA-
        ...  ..:.  :..     . :. : . ..  ::         :: .. ::  ....: 
gi|142 -RLVGSNQKTTMAQQPPPPAASTEER-G-RRQTSG--------GYLARAAGTGSRAAEAS
           530       540        550                560       570   

         200         210          220       230       240          
K9D7.1 ---NFS--PQEFSATMT-IETQIR--GEEVEKRVERRLQETEWKLLFLPEASFYKDY   
          :..  :   .:. :  :.:.   : ..   .: :  . :  :: . .: ....    
gi|142 GNSNLGEEPPAAAASDTDTEVQVSIIGSDA--LLELRCPHREGLLLRVMQA-LHQELRLE
           580       590       600         610       620        630

gi|142 ITSVQASSAGDVLLAKLRAKVKEVHGRRSSITEVKRAIHLIVSSDWICEKNPCLA
              640       650       660       670       680     

Library scan:  0:00:00  total CPU time:  0:00:00