SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K3K3.P2 (Universal genetic code) : 374 aa
 vs  library
 searching gmu53418 library

    480 residues in     1 sequences
The best scores are:                              s-w
GMU53418, 480 bases, 139B checksum.                (480)2249

>>GMU53418, 480 bases, 139B checksum.                (480 aa)
Smith-Waterman score: 2249;   91.444% identity in 374 aa overlap

               10        20        30        40        50        60
K3K3.P MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ
       :::::::::::::::::::::::::.:::::::::  :: ::::::::::::::: .:::
GMU534 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
K3K3.P CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD
       :::::::::::::::: ::::::::::::::: :::::::::::::::::::::::: ::
GMU534 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD
               70        80        90       100       110       120

              130       140       150       160       170       180
K3K3.P KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE
       ::::::::::::::::::::: ::::::::::::::::::::::: ::::::::::::::
GMU534 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE
              130       140       150       160       170       180

              190       200       210       220       230       240
K3K3.P TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST
       :::: ::.::::.:::.:::: .:.:::::::::::::::::::::::::::::::::.:
GMU534 TPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
              190       200       210       220       230       240

              250       260       270       280       290       300
K3K3.P GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI
       ::.: ::::.:::::::: :::::::::::::::::::::::::.:::::::::::::::
GMU534 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
              250       260       270       280       290       300

              310       320       330       340       350       360
K3K3.P KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQI
       :::::::.:::::.:.::::::::::.:::::::::::::::::::::::.:::::::..
GMU534 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL
              310       320       330       340       350       360

              370                                                  
K3K3.P SIYDPQVTEEQIQR                                              
       :::::::::.::::                                              
GMU534 SIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILT
              370       380       390       400       410       420

GMU534 EWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA
              430       440       450       460       470       480

Library scan:  0:00:00  total CPU time:  0:00:01