SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K3K3.13 (Universal genetic code) : 284 aa
 vs  library
 searching atu30481 library

    255 residues in     1 sequences
The best scores are:                              s-w
ATU30481, 255 bases, 16D checksum.                 (255) 975

>>ATU30481, 255 bases, 16D checksum.                 (255 aa)
Smith-Waterman score: 975;   57.727% identity in 220 aa overlap

               10        20        30        40        50        60
K3K3.1 MIMQATYPVEDPVPTHPMAPTQPMAPTHPMVLTHPMVPTHPMVLTHPMAPSHPMVAKCRI
                                                                   
ATU304                                  MNLTEYSHILFLSLCTLNFCLYSINSD
                                                10        20       

               70           80        90       100       110       
K3K3.1 LVGVMAVPHSTVTSMVEK---LNGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEI
               :.:  . ..    ..::::::.::.:::::.::::::::::.:..::::.:.
ATU304 DNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFEL
        30        40        50        60        70        80       

       120       130       140         150       160       170     
K3K3.1 MCEHAPQWCLPGSIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGV
        ::  :.::.:::: ..:::::::.:.  :::  ::::: :::::..: ::.::.:.::.
ATU304 TCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGI
        90       100       110       120       130       140       

         180       190       200       210       220        230    
K3K3.1 VPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRT-QWIAMKKNW
       ::: :::::: : ::..: :.:::.: ..:  :::::: .::...::..: :: .:..::
ATU304 VPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNW
       150       160       170       180       190       200       

          240       250         260       270       280    
K3K3.1 GQIWSTGVVLTGQCLSFRLTTSDG--VMKEFIDVTPPDWKCNGQSFDGKVNF
       :: :.... : :: :::..: :::  :.. . ::.: ::.  ::.:.:    
ATU304 GQNWQSNTYLRGQSLSFQVTDSDGRTVVS-Y-DVVPHDWQF-GQTFEGGQF 
       210       220       230         240        250      

Library scan:  0:00:00  total CPU time:  0:00:00