SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K3K3.12 (Universal genetic code) : 253 aa
 vs  library
 searching ptu64893 library

    232 residues in     1 sequences
The best scores are:                              s-w
PTU64893, 232 bases, 1D11 checksum.                (232) 991

>>PTU64893, 232 bases, 1D11 checksum.                (232 aa)
Smith-Waterman score: 991;   55.603% identity in 232 aa overlap

               10        20        30        40          50        
K3K3.1 MSYGHRAMINDVAEAPVIDNVGSPTNGLDSSWYDARATFYG--DIHGGETQQGACGYGDL
                            :.  .:  ..: .:.:::::  :  :  :. ::::::.:
PTU648                    LTGA--HGY-GGWESAHATFYGGSDASG--TMGGACGYGNL
                                     10        20          30      

       60        70        80        90       100       110        
K3K3.1 FKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYS--KT
       ..:::: .::::::::::.: .:::::...:  :::::::::. .::::::::. .  . 
PTU648 YSQGYGTNTAALSTALFNDGLSCGACYEMQCNDDPQWCLPGTVTVTATNFCPPNNALPND
         40        50        60        70        80        90      

        120       130       140       150       160       170      
K3K3.1 EGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILP
       .: ::::: .:::.. : :::::.:..:.::. : :. : : ::..: ..:. :: ..: 
PTU648 NGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLRKGGIRFTVNGHSYFNLVLI
        100       110       120       130       140       150      

        180       190       200       210       220       230      
K3K3.1 YNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNV
        :::::::.. ...::...::  :..:::::: ..  :.::..::.:::::: :   :::
PTU648 TNVGGAGDVNAVSIKGSRSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSNNV
        160       170       180       190       200       210      

        240       250   
K3K3.1 MPNNWGFGQTFDGKINF
        :.:: :::::.:.   
PTU648 APSNWQFGQTFEGSQV 
        220       230   

Library scan:  0:00:00  total CPU time:  0:00:00