SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K3K3.11 (Universal genetic code) : 263 aa
 vs  library
 searching s53082 library

    258 residues in     1 sequences
The best scores are:                              s-w
S53082, 258 bases, 6F8 checksum.                   (258)1033

>>S53082, 258 bases, 6F8 checksum.                   (258 aa)
Smith-Waterman score: 1033;   57.661% identity in 248 aa overlap

               10        20        30        40        50          
K3K3.1 MAMWVVPMSYGHGAMIGNAVEAPDVAEAPGINDPSKALDPNWYDARATFYG--DIHGGDT
                            :: .:. ::.   .    : : .:.:::::  :  :  :
S53082      MAAILLLTIASLTSLFAPTTARIPGVYTGG----P-WTSAHATFYGGSDASG--T
                    10        20        30             40          

       60        70        80        90       100         110      
K3K3.1 QQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITAT
       . ::::::::. ::::. ::::::::::.: .::::.:. : .::.:: ::  :. ::::
S53082 MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGNPSILITAT
       50        60        70        80        90       100        

        120         130       140       150       160       170    
K3K3.1 NFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFE
       :::: :... .:   :::::. ::::.. ::::::.:.::.::: :::.:: :.::..: 
S53082 NFCPPNFAEPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKAGGIRFT
      110       120       130       140       150       160        

          180       190       200       210       220       230    
K3K3.1 TKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVT
        .:  :: .::: ::.:::::  :.:: ..:.:.::..:::::: ...:..::.::::::
S53082 INGFRYFNLVLITNVAGAGDIVRVSVKGTNTAWMTMSRNWGQNWQSNAVFVGQALSFRVT
      170       180       190       200       210       220        

          240       250       260     
K3K3.1 TTDGITKDFWNVMPKNWGFGQTFDGKINF  
        .:  :.  ::: : .: ::::: :: ::  
S53082 GSDRRTSTSWNVAPPHWQFGQTFTGK-NFRV
      230       240       250         

Library scan:  0:00:00  total CPU time:  0:00:00