SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K3K3.10 (Universal genetic code) : 252 aa
 vs  library
 searching ptu64893 library

    232 residues in     1 sequences
The best scores are:                              s-w
PTU64893, 232 bases, 1D11 checksum.                (232) 991

>>PTU64893, 232 bases, 1D11 checksum.                (232 aa)
Smith-Waterman score: 991;   56.140% identity in 228 aa overlap

               10        20        30        40          50        
K3K3.1 MSYGHRAMINDVAEAPVFDDVVSPNGLDSSWYDARATFYG--DIHGGETQQGACGYGDLF
                               .:  ..: .:.:::::  :  :  :. ::::::.:.
PTU648                     LTGAHGY-GGWESAHATFYGGSDASG--TMGGACGYGNLY
                                    10        20          30       

       60        70        80        90       100       110        
K3K3.1 KQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYS--KTE
       .:::: .::::::::::.: .:::::...: .::::::::.: .::::::::. .  . .
PTU648 SQGYGTNTAALSTALFNDGLSCGACYEMQCNDDPQWCLPGTVTVTATNFCPPNNALPNDN
        40        50        60        70        80        90       

        120       130       140       150       160       170      
K3K3.1 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPY
       : ::::: .:::.. : :::::.:..:.::. : :. : : ::..: ..:. :: ..:  
PTU648 GGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLRKGGIRFTVNGHSYFNLVLIT
       100       110       120       130       140       150       

        180       190       200       210       220       230      
K3K3.1 NVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVM
       :::::::.. ...::...::  :..:::::: ..  :.::..::.:::::: :   ::: 
PTU648 NVGGAGDVNAVSIKGSRSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSNNVA
       160       170       180       190       200       210       

        240       250  
K3K3.1 PNNWGFGQTFDGKINF
       :.:: :::::.:.   
PTU648 PSNWQFGQTFEGSQV 
       220       230   

Library scan:  0:00:00  total CPU time:  0:00:00