SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K2A18.P1 (Universal genetic code) : 48 aa
 vs  library
 searching ggringznf library

    381 residues in     1 sequences
The best scores are:                              s-w
GGRINGZNF, 381 bases, 1970 checksum.               (381) 231

>>GGRINGZNF, 381 bases, 1970 checksum.               (381 aa)
Smith-Waterman score: 231;   54.167% identity in 48 aa overlap

GGRING MLLSIGMLMLSATQIYTIVTVQLFAFLNLLPVEADILAYNFENGTQTFDDLPARFGYRLP
               10        20        30        40        50        60

GGRING AEGLKGFLINSKPENACEPIAPPPLRDNSSTAFIVLIRRLECNFDIKVLNAQRAGYKAAI
               70        80        90       100       110       120

GGRING VHNVDSDDLISMGSNDIEILKKIDIPSVFIGEASANSLKEEFTYEKGGHVVLIPEFSLPL
              130       140       150       160       170       180

                                                                   
K2A18.                                                          ETC
                                                                ..:
GGRING EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC
              190       200       210       220       230       240

            10        20        30        40                       
K2A18. AICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCKHDI               
       ::::..:. :..::.:::.::.: .:.: ::::   .:::::. .               
GGRING AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSETDSSQ
              250       260       270       280       290       300

GGRING EENEVSENTPLLRPLASVSTQSFGALSESHSHQNMTESSEYEEDDNDNIDSSDAESGVNE
              310       320       330       340       350       360

GGRING ESVVVQLQPNDERDYRVTNTV
              370       380 

Library scan:  0:00:00  total CPU time:  0:00:00