SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K2A18.9 (Universal genetic code) : 207 aa
 vs  library
 searching tm017a056 library

    292 residues in     1 sequences
The best scores are:                              s-w
TM017A056, 292 bases, 1CB checksum.                (292) 971

>>TM017A056, 292 bases, 1CB checksum.                (292 aa)
Smith-Waterman score: 971;   67.089% identity in 237 aa overlap

                            10           20        30        40    
K2A18.            MDGYYSLS--PISV---LHRIKDSFHFAVSALLANLFSALFTFFFAL--
                    : : ::  : :.   ..::::. :: :::.:....::..::::::  
TM017A MASSSSSSYRFQSGSYPLSSSP-SLGNFVERIKDACHFLVSAVLGTIISAILTFFFALGL
               10        20         30        40        50         

                        50        60        70        80        90 
K2A18. ----V-------GTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQS
           :       :::::::::::::::::::::::::.::::::::::::::::: ::.:
TM017A FSFLVTLLEIVLGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLDLWKS
      60        70        80        90       100       110         

             100       110       120       130       140       150 
K2A18. DESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISK
       ::::.::.:::::::.:::::::::::::::::::::::::::.. :.:::..:::. ::
TM017A DESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGGSK
     120       130       140       150       160       170         

             160                          170       180       190  
K2A18. GLTGDSLNRIPKVTK-------------------QDFQVGETVRSLPHCHHMFHLPCIDK
       ::::: ...:::.:                    ::::.::::::::::::::::::::.
TM017A GLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDN
     180       190       200       210       220       230         

            200                                             
K2A18. WLRRHASCPLCRRHL                                      
       :: ::.:::.                                           
TM017A WLLRHGSCPILTSQFRYFYSSYIKSLLCSSSLLLEFHSHCRTPSSLMYKETQK
     240       250       260       270       280       290  

Library scan:  0:00:00  total CPU time:  0:00:00