SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K2A18.18 (Universal genetic code) : 223 aa
 vs  library
 searching cfi_arath library

    246 residues in     1 sequences
The best scores are:                              s-w
CFI_ARATH, 246 bases, 1843 checksum.               (246) 904

>>CFI_ARATH, 246 bases, 1843 checksum.               (246 aa)
Smith-Waterman score: 904;   64.159% identity in 226 aa overlap

                         10        20        30                40  
K2A18.           MPLPSVTPLHVDAFTFPPAVESPASHKRLFLGGAG--------KFVIVTV
                  :.:.:: ::::. :: :.:.:::: . :::::::        :::: ::
CFI_AR MSSSNACASPSPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTV
               10        20        30        40        50        60

             50        60        70        80        90       100  
K2A18. IGVYLEAMALPSISAKWKGKNAKELTESVPFFRQLVTGEFEKLARVTMKKRLTGIQYSEK
       ::::::. :.::.:.:::::...:::::.::::..::: :::. .::::  ::: :::::
CFI_AR IGVYLEGNAVPSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEK
               70        80        90       100       110       120

            110       120       130       140       150       160  
K2A18. VVENCEEIMKASGKYTRSEAKAIDQFLMVFKNQDFPPGSSIIFAICPKGSLTIAFSKEER
       :.:::  : :  : ::  ::::...:: .::.. :::::::.::. : ::::.::::.. 
CFI_AR VTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDS
              130       140       150       160       170       180

            170       180       190       200        210       220 
K2A18. VPKTGKAVIKNKLLGEAVLESMIGKNGVSPATRKSLAERLSKLMNK-KDPYNEANVNVAT
       .:.:: :::.::::.::::::.::::::::.:: :.:::::.:: : ::   : .:.   
CFI_AR IPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMKNKD---EKEVSDHS
              190       200       210       220          230       

                
K2A18. KN       
                
CFI_AR LEEKLAKEN
       240      

Library scan:  0:00:00  total CPU time:  0:00:00