SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K2A18.13 (Universal genetic code) : 250 aa
 vs  library
 searching prc6_arath library

    250 residues in     1 sequences
The best scores are:                              s-w
PRC6_ARATH, 250 bases, A9E checksum.               (250)1507

>>PRC6_ARATH, 250 bases, A9E checksum.               (250 aa)
Smith-Waterman score: 1507;   95.219% identity in 251 aa overlap

               10        20        30        40        50        60
K2A18. MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
PRC6_A MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSA
               10        20        30        40        50        60

               70        80        90       100       110       120
K2A18. RKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
PRC6_A RKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYT
               70        80        90       100       110       120

              130       140       150       160       170       180
K2A18. QSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE
       ::::::::::::::::::::.:.:.:::::::::::::::::::::::::::::::::::
PRC6_A QSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE
              130       140       150       160       170       180

              190       200       210        220       230         
K2A18. SSGQETIKLAIRALLEVVESGGKNIEVAVMTREETG-LRQLEEAEIDAIVAKIEAEKAAA
       :.::::.::::::::::::::::::::::::::: : :.:::: ::: :::.::::::::
PRC6_A SAGQETVKLAIRALLEVVESGGKNIEVAVMTREE-GVLKQLEEEEIDIIVAEIEAEKAAA
              190       200       210        220       230         

     240       250
K2A18. EAAKKGPPKET
       ::::::: :::
PRC6_A EAAKKGPAKET
     240       250

Library scan:  0:00:00  total CPU time:  0:00:00