SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K2A18.12 (Universal genetic code) : 594 aa
 vs  library
 searching ra17_schpo library

    606 residues in     1 sequences
The best scores are:                              s-w
RA17_SCHPO, 606 bases, 60C checksum.               (606) 541

>>RA17_SCHPO, 606 bases, 60C checksum.               (606 aa)
Smith-Waterman score: 541;   26.599% identity in 688 aa overlap

               10        20        30        40         50         
K2A18. MLKKKLSLEDEDDDRSYNLRSSRSNAKSKPRSSAGTATNPR-ASKRARLSGASAT---QE
        ....::.. :.  ::  :.      :.: :.      .:  .:: .: ..:: :   .:
RA17_S  MRRQLSFH-ESTKRS--LK------KKKIRK----IEKPSLVSKTSRDKNASITDIHEE
                 10                20            30        40      

         60        70        80        90       100       110      
K2A18. DSSLVDKCLSYVYVLACHLDEGLEFRFLYVSQIRLSFEDFDEALSGFKVSSGYERSKNTD
       :   ..  .:         ::  : .........   ::       :.            
RA17_S D---IEA-FS---------DE--ENKIVHLNNLK---EDR------FQ------------
            50                    60                 70            

        120       130       140       150       160       170      
K2A18. LWVDKYRPRTLEELSVHKKKVDEVKLWFQESLDFLKQNGLRNNVLLVTGQAGVGKSATIH
       :: .:: :.   .:.:::.:.. .: :.   :     ..:.. .::. : .: :::....
RA17_S LWFEKYIPQKAADLAVHKSKISAIKQWM---LT----DSLESRLLLICGPSGCGKSTAVQ
               80        90          100           110       120   

        180        190       200       210       220       230     
K2A18. LITSILGVTVHEW-NAPIPTIWQEHVHNTSSGLKYTSKLDEFENFVESTRKYGVMASSST
       .... :: .. :: : :. .. .:  .. :. :. : :...: .. :.  .  .: :.. 
RA17_S VLAKELGYSLIEWLN-PM-NL-KEPSNQESDTLSLTEKFSRFMSLCETYPELELMDSNNI
           130        140         150       160       170       180

           240           250           260       270       280     
K2A18. D--GIKAP----VVLLIDDLP-LA--NGR-HAFERLQNCLLLLVKSTQIPTVILI-TD-H
       .  : .:      ..: :..: :.  ::   :: :  : .   . :    ..:.. :. .
RA17_S QKRGKNAQGKKKFIFL-DEIPHLSKFNGSLDAF-R--NVIRTALTSRGAFSIIMVLTEIQ
              190        200       210          220       230      

               290             300       310       320       330   
K2A18. -NN---ADSSDQ----TARRM-EDT-QSSLERAGALKVAFNPITKNSIKKVLQRICREEH
        ::    .:.:.    ... : .:  :.   :. .:.  ::::. . .:: :  : :.: 
RA17_S LNNLEGINSQDRNSFNSVQIMGNDLLQD--PRVTVLQ--FNPIAPTYMKKCLGSILRKEG
        240       250       260         270         280       290  

               340       350       360         370                 
K2A18. C----KVTTMEIDQMATASGGDIRHAITSLQLFSVKP--ELNHTK-IKSPRPG-------
            :. .. .... .:: ::.: ::.:::: :..   : . :: :.  . :       
RA17_S VPKSPKLLSL-VENICSASEGDLRSAINSLQL-SISQSFEKKGTKNIREVKEGKGKGNDF
            300        310       320        330       340       350

      380                      390        400       410       420  
K2A18. -ME-----------DN--Y--HGNEQTMY-SGLDSGISSCFGRDETLSLFHALGKFLHNK
        .:           :.  :    : .. :    :.. .: : .:  :...::.:: . ::
RA17_S SLEAAQVLERLSKSDSEAYARFKNYKSAYIPKSDKNENSFFKKDVGLGMMHAIGKVVWNK
              360       370       380       390       400       410

            430       440        450       460          470        
K2A18. RETDNVIISDFLKWTLYVNEVLDF-VSDGAIEDAWCVSSYL-ADA-DLLL-AD--IRGKM
       :: :. ...   . :   ...    :: .  :.  :.:  : .:  . .: .:  . .: 
RA17_S REGDDEVLKASSQQTGNSERIKGVKVSKSQ-ENKNCIS--LKSDQRERMLNVDQCFTSKR
              420       430       440          450       460       

        480        490         500        510       520        530 
K2A18. SGHNNTED-VPQSAGASVAV-R-GVLYGNK-QPCSSRWHVIRKPKLWQV-EQSSIQTKKN
        .  . :. . :: : : .: : : :. :  . :      .   . ..: .  ::.    
RA17_S RSLVDIESTINQS-GLSGSVFRYG-LFENYVDSC------VTTDEAFNVCDLLSISD--C
       470       480        490              500       510         

             540        550           560          570             
K2A18. LREQRNISYEGSRVAD-ISVMATEY---SPV-LKW--LSYRA-SPDA-----FPG-M---
       : ..   :: :....  .::..: .   :::  ::  : ..  . ..     :   :   
RA17_S LSHDFPYSYTGDEISTWFSVQGTLFYLPSPVPRKWRQLRFQQWNNEGIVRGIFDDYMVIY
       520       530       540       550       560       570       

               580            590     
K2A18. GEET--D---E--EDS---DISEDDEIQDW 
       :...  :   :  ::.   ::  :: :.:  
RA17_S GKRSVSDPVIEAHEDQVLEDI--DDPIEDED
       580       590         600      

Library scan:  0:00:00  total CPU time:  0:00:02