SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K2A18.11 (Universal genetic code) : 442 aa
 vs  library
 searching arob_haein library

    362 residues in     1 sequences
The best scores are:                              s-w
AROB_HAEIN, 362 bases, 1F73 checksum.              (362)1224

>>AROB_HAEIN, 362 bases, 1F73 checksum.              (362 aa)
Smith-Waterman score: 1224;   54.891% identity in 368 aa overlap

               10        20        30        40        50        60
K2A18. MAANTISLSNVAASKNLNSFQSRAFIAPPTIFFPVASAKSKPGELSLSSTTLSRSRVRAG

               70        80        90        100        110        
K2A18. ASQLMNEPLNDQRSISSPTVVEVDLGDRSYPIYIGAGLL-DH-SELLQRHVHGKRVLVVT
                           :.:.: .: ::: ::.::: :. :  ..:   : ::..::
AROB_H                  MLCVNVELQERRYPILIGSGLLQDERSYPIKR---GDRVMIVT
                                10        20        30           40

      120       130        140       150       160       170       
K2A18. NDRVAPLYLDKTIDALT-RGNPNVTVESVILPDGEKYKDMDTLMKVFDKAIESRLDRRCT
       :  :: .::: .: ::  ::   : :. :.:::::::: ...:  .:   ...   :  :
AROB_H NPTVAQFYLDTVIYALEKRGC--V-VDHVLLPDGEKYKTLESLNLIFTALLQGNHGRDTT
               50        60           70        80        90       

       180       190       200       210       220       230       
K2A18. FVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY
       ..:::::::::. :.::::: ::: .::::::...::::::::::..::.::::.:::::
AROB_H IIALGGGVIGDVAGFAAASYQRGVRLIQIPTTLLSQVDSSVGGKTAVNHELGKNMIGAFY
       100       110       120       130       140       150       

       240       250       260       270       280       290       
K2A18. QPQCVLVDTDTLNTLPDREMASGLAEVIKYGLIRDAEFFEWQEKNIEALLARDPAALAFA
       ::. :..:: :::::: ::. .::::::::: : : ::::: :..:. :.:  : ::   
AROB_H QPSMVIIDTLTLNTLPKREVNAGLAEVIKYGAILDYEFFEWLEQHIDELVALHPEALQHC
       160       170       180       190       200       210       

       300       310       320       330       340       350       
K2A18. IKRSCENKADVVSQDEKESGLRATLNLGHTFGHAIETGFGYGEWLHGEAVAAGTVMAVDM
       :.: :. :::::..:: :.: :: ::::::::::::: .:::.:::::::..: .::. .
AROB_H ISRCCQIKADVVARDETEKGDRALLNLGHTFGHAIETHLGYGNWLHGEAVSTGMMMAAAL
       220       230       240       250       260       270       

       360         370       380       390       400       410     
K2A18. SYRLGWIDESI--VKRVNKILVRAKLPTTPPESMTVSMFKSIMAVDKKVADGLLRLILLK
       : .::  : ::  :.:..:.:.::.:::. :..:    .   :  :::: .: :::.:::
AROB_H SEELG--DISIADVSRLEKLLARANLPTVSPDTMQPEDYLPHMMRDKKVLSGKLRLVLLK
       280         290       300       310       320       330     

         420       430        440   
K2A18. GPLGNCVFTGDYDRE-ALDATLRAFSKS 
       . ::.   ..: ..  .:.: .:  ... 
AROB_H S-LGQAYVANDTEHTLVLNA-IRRCTQTD
          340       350        360  

Library scan:  0:00:00  total CPU time:  0:00:01