SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K24G6.14 (Universal genetic code) : 486 aa
 vs  library
 searching cs3kct library

    462 residues in     1 sequences
The best scores are:                              s-w
CS3KCT, 462 bases, 1E0C checksum.                  (462)2160

>>CS3KCT, 462 bases, 1E0C checksum.                  (462 aa)
Smith-Waterman score: 2160;   67.959% identity in 490 aa overlap

               10        20        30          40          50      
K24G6. MERAMERQKILLRHLNPVSSSNSSLKHEPSLLSPVNCVS--EVSPM--AAFGDDIVIVAA
       ::.:..::.:::.:: : ::  :.  .: :: . : :..   .: .  ..::::.:::::
CS3KCT MEKAINRQSILLHHLRP-SS--SAYTNESSLSASV-CAAGDSASYQRTSVFGDDVVIVAA
               10           20        30         40        50      

         60        70        80        90       100       110      
K24G6. YRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECR
       :::::::..::::::: :::::: ::::..:.:.:.::::::::::.:.::::::: :::
CS3KCT YRTAICKSKRGGFKDTYPDDLLAPVLKALIEKTNLNPSEVGDIVVGSVLAPGSQRASECR
         60        70        80        90       100       110      

        120       130       140       150       160       170      
K24G6. VAAYFAGFPGTKSHSRIKINLISHKLLICFFILLFYELDSVPVRTVNRQCSSGLQAVADV
       .::..::::                             ..::::::::::::::::::::
CS3KCT MAAFYAGFP-----------------------------ETVPVRTVNRQCSSGLQAVADV
        120                                    130       140       

        180       190       200        210       220       230     
K24G6. AASIRAGYYDIGIGAGVESMSTDHIPGGGFHGS-NPRAQDFPKARDCLLPMGITSENVAE
       ::.::::.::::::::.:::.:.  : . ..:: :::.... .:..::::::.::::::.
CS3KCT AAAIRAGFYDIGIGAGLESMTTN--PMA-WEGSVNPRVKSIENAQNCLLPMGVTSENVAQ
       150       160       170          180       190       200    

         240       250       260       270       280       290     
K24G6. RFGVTREEQDMAAVESHKRAAAAIASGKLKDEIIPVATKIVDPETKAEKAIVVSVDDGVR
       ::::.::.::.::.:::..:::: ::::.:::::::.:::.::.:  :: ...:::::.:
CS3KCT RFGVSREKQDQAAIESHRKAAAATASGKFKDEIIPVSTKIIDPKTGQEKPVTISVDDGIR
          210       220       230       240       250       260    

         300       310       320       330       340       350     
K24G6. PNSNMADLAKLKTVFKQNGSTTAGNASQISDGAGAVLLMKRSLAMKKGLPILGVFRSFAV
       ::...:::.:::.:::..:.:::::.::.:::::::::::::.::.::::::::::.:..
CS3KCT PNTTQADLGKLKAVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFSA
          270       280       290       300       310       320    

         360       370       380       390       400        410    
K24G6. TGVEPSVMGIGPAVAIPAATKLAGLNVSDIDLFEINEAFASQYVYSCK-KLELDMEKVNV
       .::.:..::.:::::::::.: :::...::::::::::::::.:: :. :: :: ::.::
CS3KCT VGVDPAIMGVGPAVAIPAAVKAAGLELNDIDLFEINEAFASQFVY-CRNKLGLDPEKINV
          330       340       350       360        370       380   

          420       430       440       450       460       470    
K24G6. NGGAIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::.
CS3KCT NGGAIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDCVDE
           390       400       410       420       430       440   

           480            
K24G6. LSNAR-VANGDSH      
       : ::. : .:         
CS3KCT LCNAKKVEGGVNLLSKDAR
           450       460  

Library scan:  0:00:00  total CPU time:  0:00:01