SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K24G6.12 (Universal genetic code) : 310 aa
 vs  library
 searching ljpanc library

    308 residues in     1 sequences
The best scores are:                              s-w
LJPANC, 308 bases, 1DDF checksum.                  (308)1423

>>LJPANC, 308 bases, 1DDF checksum.                  (308 aa)
Smith-Waterman score: 1423;   67.628% identity in 312 aa overlap

               10        20        30        40        50        60
K24G6. MEPEVIRDKDSMRKWSRAMRSQGKTIGLVPTMGYLHEGHLSLVRQSLALTDVTVVSIYVN
       : : :: ::: ::::::.:::::: :.::::::.::::::::::..   .:...::::::
LJPANC MAPMVISDKDEMRKWSRSMRSQGKLIALVPTMGFLHEGHLSLVRDAHNHADLVAVSIYVN
               10        20        30        40        50        60

               70        80        90        100        110        
K24G6. PGQFSPTEDLSTYPSDFSGDLTKLAALSGGKV-VVFNPKNLYDYGGET-KKINDGGGNGG
       :::::::::::.:::::.::: :: .. :: : :::.:.:::::::.    . . ::.: 
LJPANC PGQFSPTEDLSAYPSDFQGDLQKLMSVPGG-VDVVFHPHNLYDYGGDGGDAVAECGGDG-
               70        80        90        100       110         

      120        130       140       150       160       170       
K24G6. RVVSCVEE-GGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKK
        :::::.. .:.:::::.:.:.::: .::::::::::::::::::::::::::::.::::
LJPANC -VVSCVDRRSGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKK
       120       130       140       150       160       170       

       180       190       200       210       220       230       
K24G6. DYQQWRIIQRMVRDLNFGIEIVGSDIAREKDGLAMSSRNVRLSDEERQRALSISRSLAMA
       :::::.:::::::::.:.:...::.. ::::::::::::: :: :::..:.::..::  :
LJPANC DYQQWKIIQRMVRDLDFSIKVIGSEVIREKDGLAMSSRNVYLSPEEREKAVSINKSLFRA
       180       190       200       210       220       230       

       240        250       260       270       280       290      
K24G6. KASVAE-GKTNCAELKDMIIQQVVGSAGRVDYVEIVDQETLEGVEEIKSGVVICVAAWFG
       : :.:: :. .: .: ....:... ..::.::.:::::..:: :: ::. ::.::.::::
LJPANC K-SAAEDGQIHCEKLINLVVQSITEAGGRIDYAEIVDQNNLEKVEWIKGPVVFCVSAWFG
        240       250       260       270       280       290      

        300       310
K24G6. TVRLIDNIEINVSL
        .:::::::::.  
LJPANC KARLIDNIEINL  
        300          

Library scan:  0:00:00  total CPU time:  0:00:00