SSEARCH searches a sequence database
using the Smith-Waterman algorithm
version 2.0u54, July. 1996
Please cite:
T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197;
W.R. Pearson (1991) Genomics 11:635-650
>K23L20.13 (Universal genetic code) : 853 aa
vs library
searching gi:2660670 library
925 residues in 1 sequences
The best scores are: s-w
gi|2660670 (925)4733
>>gi|2660670 (925 aa)
Smith-Waterman score: 4733; 90.071% identity in 846 aa overlap
10 20 30 40 50 60
K23L20 MAPSRRDLQLTPVTGGSSSQISDMEEVGLLDSYHNEANADDILTKIEEGRDVSGLRKIQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 MAPSRRDLQLTPVTGGSSSQISDMEEVGLLDSYHNEANADDILTKIEEGRDVSGLRKIQV
10 20 30 40 50 60
70 80 90 100 110 120
K23L20 GVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEAIEDAGFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 GVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEAIEDAGFE
70 80 90 100 110 120
130 140 150 160 170 180
K23L20 AEILAEEQTQATLVGQFTIGGMTCAACVNSVEGILRDLPGVKRAVVALSTSLGEVEYDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 AEILAEEQTQATLVGQFTIGGMTCAACVNSVEGILRDLPGVKRAVVALSTSLGEVEYDPN
130 140 150 160 170 180
190 200 210 220 230 240
K23L20 VINKDDIVNAIEDAGFEGSLVQSNQQDKLVLRVDGILNELDAQVLEGILTRLNGVRQFRL
:::::::::::::::::::::::::::::::: .:: :
gi|266 VINKDDIVNAIEDAGFEGSLVQSNQQDKLVLR-----------ILE----R---------
190 200 210
250 260 270 280 290 300
K23L20 DRISGELEVVFDPEVVSSRSLVDGIEEDGFGKFKLRVMSPYERLSSKDTGEASNMFRRFI
:.. :: :.:: .:
gi|266 ------------PQIC-------------FG-----VLSPV-------------LF----
220
310 320 330 340 350 360
K23L20 SSLVLSIPLFFIQVICPHIALFDALLVWRCGPFMMGDWLKWALVSVIQFVIGKRFYVAAW
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 ----L-IPLFFIQVICPHIALFDALLVWRCGPFMMGDWLKWALVSVIQFVIGKRFYVAAW
230 240 250 260 270 280
370 380 390 400 410 420
K23L20 RALRNGSTNMDVLVALGTSASYFYSVGALLYGAVTGFWSPTYFDASAMLITFVLLGKYLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 RALRNGSTNMDVLVALGTSASYFYSVGALLYGAVTGFWSPTYFDASAMLITFVLLGKYLE
290 300 310 320 330 340
430 440 450 460 470 480
K23L20 SLAKGKTSDAMKKLVQLTPATAILLTEGKGGKLVGEREIDALLIQPGDTLKVHPGAKIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 SLAKGKTSDAMKKLVQLTPATAILLTEGKGGKLVGEREIDALLIQPGDTLKVHPGAKIPA
350 360 370 380 390 400
490 500 510 520 530 540
K23L20 DGVVVWGSSYVNESMVTGESVPVSKEVDSPVIGGTINMHGALHMKATKVGSDAVLSQIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 DGVVVWGSSYVNESMVTGESVPVSKEVDSPVIGGTINMHGALHMKATKVGSDAVLSQIIS
410 420 430 440 450 460
550 560 570 580 590 600
K23L20 LVETAQMSKAPIQKFADYVASIFVPVVITLALFTLVGWSIGGAVGAYPDEWLPENGTHFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 LVETAQMSKAPIQKFADYVASIFVPVVITLALFTLVGWSIGGAVGAYPDEWLPENGTHFV
470 480 490 500 510 520
610 620 630 640 650 660
K23L20 FSLMFSISVVVIACPCALGLATPTAVMVATGVGATNGVLIKGGDALEKAHKVKYVIFDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 FSLMFSISVVVIACPCALGLATPTAVMVATGVGATNGVLIKGGDALEKAHKVKYVIFDKT
530 540 550 560 570 580
670 680 690 700 710 720
K23L20 GTLTQGKATVTTTKVFSEMDRGEFLTLVASAEASSEHPLAKAIVAYARHFHFFDESTEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 GTLTQGKATVTTTKVFSEMDRGEFLTLVASAEASSEHPLAKAIVAYARHFHFFDESTEDG
590 600 610 620 630 640
730 740 750 760 770 780
K23L20 ETNNKDLQNSGWLLDTSDFSALPGKGIQCLVNEKMILVGNRKLMSENAINIPDHVEKFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 ETNNKDLQNSGWLLDTSDFSALPGKGIQCLVNEKMILVGNRKLMSENAINIPDHVEKFVE
650 660 670 680 690 700
790 800 810 820 830 840
K23L20 DLEESGKTGVIVAYNGKLVGVMGIADPLKREAALVVEGLLRMGVRPIMVTGDNWRTARAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|266 DLEESGKTGVIVAYNGKLVGVMGIADPLKREAALVVEGLLRMGVRPIMVTGDNWRTARAV
710 720 730 740 750 760
850
K23L20 AKEVRILFHNLCD
:::: :
gi|266 AKEVGIEDVRAEVMPAGKADVIRSLQKDGSTVAMVGDGINDSPALAAADVGMAIGAGTDV
770 780 790 800 810 820
gi|266 AIEAADYVLMRNNLEDVITAIDLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQ
830 840 850 860 870 880
gi|266 LPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTVLKITTE
890 900 910 920
Library scan: 0:00:00 total CPU time: 0:00:00