SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21P3.12 (Universal genetic code) : 253 aa
 vs  library
 searching gi:3342556 library

    532 residues in     1 sequences
The best scores are:                              s-w
gi|3342556                                         (532) 767

>>gi|3342556                                         (532 aa)
Smith-Waterman score: 767;   48.544% identity in 309 aa overlap

gi|334 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP
               10        20        30        40        50        60

gi|334 SASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRF
               70        80        90       100       110       120

gi|334 VEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVW
              130       140       150       160       170       180

                           10         20             30            
K21P3.             MSLANGLYSKDPLI-QLDSAIKINRILSD-----DNV-RG-------Q
                              ::. ::.   :.. .: .     .:  ::       :
gi|334 ALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLS-MLRNATWTLSNFCRGKPQPHFDQ
              190       200       210        220       230         

              40          50        60        70        80         
K21P3. VKPAL---E--IHLNSSDKEILRYVCLAISHLCYGSVDGIQRVIQAGFVPKLVSVLRRPS
       :::::   :  ::  :.:.:.:  .: :.:.:  :. : :: ::::: ::::: .: . :
gi|334 VKPALPALERLIH--SDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHS
     240       250         260       270       280       290       

      90        100                                                
K21P3. P-VLSAPELRTIGTLVTG---------N-------------NH-----------------
       : ::  : :::.:..:::         :             ::                 
gi|334 PSVL-IPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITA
       300        310       320       330       340       350      

         110       120        130       140       150       160    
K21P3. ----QSQLLIDANLI-PSSVNLALNAELDIKREAVRVILRATVGGSPNQIKYLVQQGCTK
           : : ...:::: :  :.:  :::.:::.::. .:  :: ::: .::::::.::: :
gi|334 GNKDQIQTVVEANLISPL-VSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIK
        360       370        380       390       400       410     

          170       180       190          200       210       220 
K21P3. LLCDLLVCPDIMIIKLCLYGLKNILKAGESEKN---RGDVNYYRQLIDAAEGVKKIKNLL
        :::::::::  :: .:: ::.::::.::.:::    ::.::: :::: :::..::.:: 
gi|334 PLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQ
         420       430       440       450       460       470     

             230       240        250                            
K21P3. KHERNEIYDKALNILETYW-DVEDDEKTQKPPR                         
       .:. ::::.::..:::::: . :::: ::.::                          
gi|334 SHDNNEIYEKAVKILETYWLEEEDDE-TQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS
         480       490       500        510       520       530  

Library scan:  0:00:00  total CPU time:  0:00:00