SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.P1 (Universal genetic code) : 647 aa
 vs  library
 searching d88748 library

    242 residues in     1 sequences
The best scores are:                              s-w
D88748, 242 bases, 1EF8 checksum.                  (242) 638

>>D88748, 242 bases, 1EF8 checksum.                  (242 aa)
Smith-Waterman score: 638;   50.691% identity in 217 aa overlap

               10        20        30        40        50        60
K21C13 LSCLELNDCSRLRSLPNMVNLELLKALDLSGCSELETIQGFPRNLKELYLVGTAVRQVPQ

               70        80        90       100       110       120
K21C13 LPQSLEFFNAHGCVSLKSIRLDFKKLPVHYTFSNCFDLSPQVVNDFLVQAMANVIAKHIP

              130       140       150       160       170       180
K21C13 RERHVTGFSQKTVQRSSRDSQQELNKTLAFSFCAPSHANQNSKLDLQPGSSSMTRLDPSW

              190       200       210       220       230       240
K21C13 RNTLVGFAMLVQVAFSEGYCDDTDFGISCVCKWKNKEGHSHRREINLHCWALGKAVERDH

              250       260       270       280       290       300
K21C13 TFVFFDVNMRPDTDEGNDPDIWADLVVFEFFPVNKQRKPLNDSCTVTRCGVRLITAVNCN

              310       320       330       340       350       360
K21C13 TSIENISPVLSLDPMEVSGNEDEEVLRVRYAGLQEIYKALFLYIAGLFNDEDVGLVAPLI

              370       380       390       400       410       420
K21C13 ANIIDMDVSYGLKVLAYRSLIRVSSNGEIVMHYLLRQMGKEILHTESKKTDKLVDNIQSS

              430       440       450             460       470    
K21C13 MIATKEIEITRSKSRRKNNKEKRVVCVVDRGSRSS------DLWVWRKYGQKPIKSSPYP
                                      ::::      :::.::::::::::.::.:
D88748                              MNSRSSGEVVPSDLWAWRKYGQKPIKGSPFP
                                            10        20        30 

          480       490       500       510       520       530    
K21C13 RSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFPTLRNTLAGSTRSSSSKCSD
       :.::::.::::: :::::::::::::. :::: ::::::.:  ::.::::::::.:. :.
D88748 RGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPIQRNALAGSTRSSTSSSSN
              40        50        60        70        80        90 

          540          550           560         570       580     
K21C13 VTTSASST--VSQDKEG-PDKSHLP--SS--PASPP--YAAMVVKEEDMEQWDNMEFD-V
        . :  ::  :.....: : :.::   ::  :  ::   .. ..:  : :. :.::.. :
D88748 PNPSKPSTANVNSSSNGLP-KQHLTWASSTTPPPPPPTLSSSAIK--D-ERGDDMELENV
             100       110        120       130          140       

          590                600       610        620          630 
K21C13 DVEEDTFI----PELF-----PEDTFADMDKLEENSQTMFLSRR-SSGGNME---AQGKN
       : ..:. :    :::      :.: :::...:: .: .:.::.  .. : ..    .:. 
D88748 DDDDDNQIAPYRPELHDHQHQPDDFFADLEELEGDSLSMLLSHAVTATGRIKRPRPMGSA
       150       160       170       180       190       200       

              640                         
K21C13 -SSDDREVNLPSKILNR                  
        ::  ::.                           
D88748 ISSGGREIIIIIITTTKTQGRYSIVLITGKQIILN
       210       220       230       240  

Library scan:  0:00:00  total CPU time:  0:00:00