SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.9 (Universal genetic code) : 338 aa
 vs  library
 searching atfca06 library

    834 residues in     1 sequences
The best scores are:                              s-w
ATFCA06, 834 bases, 2F6 checksum.                  (834) 531

>>ATFCA06, 834 bases, 2F6 checksum.                  (834 aa)
Smith-Waterman score: 531;   31.695% identity in 407 aa overlap

                             10        20        30        40      
K21C13               MEEFDYISEFPDCLLTQILLNLPTKDSVKTSVLSKRWRNLWLNVPG
                      .. : . ..::::: .::::::::: :: ::::.::::.:  :::
ATFCA0 MEEDRESRVSAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSVLSRRWRNVWRYVPG
               10        20        30        40        50        60

             50        60                          70              
K21C13 LR----LRTFDFPVFPYP--------YEEGF--V--R------FMDRFM---E-------
       .     :. : . :  :         . : :  :  :      ..:.     :       
ATFCA0 FNSESCLQKFKLTVNWYDDVQLETVHFTEWFNAVVKRKVQHLHILDKTWGRDEVVIPPTV
               70        80        90       100       110       120

             80                       90        100                
K21C13 FKCRS--RL---------QKFM------ITYFEHNGY-RDRLMELI--G-----TL-VDR
       : : :   :         ..:.      .  ..   . .:  .:..  :     .: :..
ATFCA0 FTCGSLISLNLYDVYLPNREFVSLPSLKVIVLDAVVFDEDFAFEMLVSGCPVLESLSVNK
              130       140       150       160       170       180

       110         120       130       140       150       160     
K21C13 -GIQHFT-GATDF-SVEIDTPRLKYMKCYESLFHRIMVKNLSSLFTIDINTKDNVGYGSL
        ... .. .  :.  : ::.:::.:.:  ..    ...:: .::.  ::.   :.:   .
ATFCA0 INLNDISENDDDYLEVVIDAPRLHYLKLNDKRTASFIMKNHGSLLKADIDFVFNLGSEYM
              190       200       210       220       230       240

         170       180       190       200         210       220   
K21C13 TAPKYSRNRDIIGDFLTVISSVRHTIICYSTSKMLYSYSK--QLGPIPQFHNLYHLQARF
         :.:  .: :: :::. .:.:.  ::  :: ...:.::.  :: :.  :.:.  :...:
ATFCA0 FDPNYLPTRHIIRDFLVGLSGVKDMIISSSTLQVIYDYSRCEQL-PL--FRNVSFLRVEF
              250       260       270       280          290       

           230       240       250           260       270         
K21C13 SSSSLQLLPTFLESCPACPNLKNLIMEFPFEP-K---NIDFHKVPQCLISTLEYVQIEEL
       ..   ..:: :::::   ::::.:.. : . : :   :: .   :. ....::::.: . 
ATFCA0 ADYRWEMLPIFLESC---PNLKSLVLGFSIPPGKEGANI-LPG-PRRFLTSLEYVKIAKP
       300       310          320       330         340       350  

     280         290       300       310       320          330    
K21C13 ILKEKSGIKL--VDYFLENSAVLKKLTLSFTYHSKKKQDPESYKKLLTSTKL---SPTCQ
       .  : : :::  :.  . :.: : . . : .  ..    :  .  :. . ..   : : :
ATFCA0 MAAEASEIKLKLVNSTM-NGA-LGNSSASVS-GGEGAGGPAPF--LVKTYEMVDDSSTDQ
            360        370        380        390         400       

                                                                   
K21C13 IIID                                                        
       :.                                                          
ATFCA0 IVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDF
       410       420       430       440       450       460       

ATFCA0 IKDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQK
       470       480       490       500       510       520       

ATFCA0 VVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVKNFGKKVEQLDISAYNKKRRLP
       530       540       550       560       570       580       

ATFCA0 EVEQSKPPSEDSHLDNSSGSSRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNE
       590       600       610       620       630       640       

ATFCA0 EGASPKGILSGGDPNTTLTKREGLPFAPEALELADTGTCPRRLLLNDNTRVETLQQRLTS
       650       660       670       680       690       700       

ATFCA0 SEETDGSFSCHLNLTLASAPLPDKTASQIAKTTLKSQELNFNSIETSASEKNRGRQEIAV
       710       720       730       740       750       760       

ATFCA0 GGSQANAAPPARVNDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRNTK
       770       780       790       800       810       820       

ATFCA0 NIEQLTL
       830    

Library scan:  0:00:00  total CPU time:  0:00:01