SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.18 (Universal genetic code) : 77 aa
 vs  library
 searching yqjg_ecoli library

    328 residues in     1 sequences
The best scores are:                              s-w
YQJG_ECOLI, 328 bases, 212F checksum.              (328) 290

>>YQJG_ECOLI, 328 bases, 212F checksum.              (328 aa)
Smith-Waterman score: 290;   51.316% identity in 76 aa overlap

YQJG_E MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVS
               10        20        30        40        50        60

YQJG_E LACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLY
               70        80        90       100       110       120

YQJG_E LHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKID
              130       140       150       160       170       180

YQJG_E ELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADI
              190       200       210       220       230       240

                          10        20        30        40         
K21C13            VYAVHFKCNKRLLREYPNIFNYIKDIYQIHGMSSTVNMEHIKQHYYGSH
                  ::..::::.:. . .: :......::::. :.. :::..::..::. ::
YQJG_E RLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSH
              250       260       270       280       290       300

      50        60        70        
K21C13 PTINPFGIIPHGPNIDYSSPHDRD-RFSS
        :::: :::  ::  : . :: :: ::. 
YQJG_E KTINPTGIISIGPWQDLDEPHGRDVRFG 
              310       320         

Library scan:  0:00:00  total CPU time:  0:00:00