SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.17 (Universal genetic code) : 173 aa
 vs  library
 searching yqjg_ecoli library

    328 residues in     1 sequences
The best scores are:                              s-w
YQJG_ECOLI, 328 bases, 212F checksum.              (328) 343

>>YQJG_ECOLI, 328 bases, 212F checksum.              (328 aa)
Smith-Waterman score: 343;   33.333% identity in 237 aa overlap

                       10        20            30          40      
K21C13         MARSGVDETSESGAFVRTASTFRNFVSQD----PDSQ--FPAESGRYHLYIS
                     :  : .: : :.::.:::... :    : .   : ::. :::::.:
YQJG_E MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVS
               10        20        30        40        50        60

         50        60        70                    80              
K21C13 YACPWACRCLSYLKIKGLDEAITFSSVHAI-----W-------GRTKET-----------
        ::::: : : . :.:::.  :. : :. .     :       : : .:           
YQJG_E LACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLY
               70        80        90       100       110       120

                              90                100         110    
K21C13 ---DDHR-G-------W-------VFPDS-------DTELP--GAEP-DYLNGA-KS-VR
          : :  :       :       :  .:       .: .   ::.  ::   : .. . 
YQJG_E LHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKID
              130       140       150       160       170       180

               120         130             140       150       160 
K21C13 EL----YEIASPN--YEGKYTVP------AVNQLYEAVDRCEEVLGKQRYICGNTFTEAD
       ::    :. .. :  :.. ...       :: ...:.. : :..::..::. :: .::::
YQJG_E ELNGWIYDTVN-NGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEAD
              190        200       210       220       230         

             170                                                   
K21C13 IRLFVTLIRFDE                                                
       :::..::.:::                                                 
YQJG_E IRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRS
     240       250       260       270       280       290         

YQJG_E HKTINPTGIISIGPWQDLDEPHGRDVRFG
     300       310       320        

Library scan:  0:00:00  total CPU time:  0:00:00