SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.14 (Universal genetic code) : 350 aa
 vs  library
 searching yqjg_ecoli library

    328 residues in     1 sequences
The best scores are:                              s-w
YQJG_ECOLI, 328 bases, 212F checksum.              (328) 986

>>YQJG_ECOLI, 328 bases, 212F checksum.              (328 aa)
Smith-Waterman score: 986;   48.734% identity in 316 aa overlap

                          10        20            30          40   
K21C13            MATPMENENPNFARTATSFRNFVSKD----PDSQ--FPAESGRYHLYIS
                             : :.:..:::... :    : .   : ::. :::::.:
YQJG_E MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVS
               10        20        30        40        50        60

            50        60        70        80        90       100   
K21C13 YACPWASRCLAILKLKGLDKAISFSSVQPLWRNTKENDEHMGWVFPDSDTEVLGAERDHI
        ::::: : : . :::::.  :: : :.::     ::    ::.: ::     ::  : .
YQJG_E LACPWAHRTLIMRKLKGLEPFISVSVVNPLML---EN----GWTFDDS---FPGATGDTL
               70        80        90              100          110

           110       120       130       140       150       160   
K21C13 NGAKSVRELYDIASSNYTGKYTVPVLWDKKLKTIVNNESSEILRMFNTEFNHVAENPSLD
          . . .::  :. .:.:. ::::::::: .:::.:::.::.::::: :. .. . . :
YQJG_E YQNEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAG-D
              120       130       140       150       160          

           170       180       190       200       210       220   
K21C13 LYPPNLRAIIDETNEWIHDGINNGVYKCGFATNQETYDVEVKRLYEALDRCEDILRKQRF
        ::: :.. ::: : ::.: .:::::: ::::.::.::  : ...:.: : :.:: ..:.
YQJG_E YYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRY
     170       180       190       200       210       220         

           230       240       250       260       270       280   
K21C13 LCGNTLTESDIRLFVTVIRFDEAYAVIFKCDKRLVREYYHLFNYTKDIYQIAGMSSTVKM
       : :: :::.::::..:..::: .:.. :::::. . .: .:... .::::. :.. ::..
YQJG_E LTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNF
     230       240       250       260       270       280         

           290       300       310        320       330       340  
K21C13 DHIKQNYYGSFPSINPLEIIAHGPNIDYSLPHDRH-RFSLESDYTRLELFESASFVCELK
       :::...:. :  .:::  ::. ::  : . :: :  ::.                     
YQJG_E DHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG                     
     290       300       310       320                             

            350
K21C13 LIEIFDSL

Library scan:  0:00:00  total CPU time:  0:00:00