SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.13 (Universal genetic code) : 435 aa
 vs  library
 searching atfca06 library

    834 residues in     1 sequences
The best scores are:                              s-w
ATFCA06, 834 bases, 2F6 checksum.                  (834) 696

>>ATFCA06, 834 bases, 2F6 checksum.                  (834 aa)
Smith-Waterman score: 696;   33.700% identity in 454 aa overlap

                              10        20        30        40     
K21C13               MDR-DYISELPDSLLTQILLELRTKDSVKTSVLSKRWRNLWLNVPG
                      :: : . .::: :: .:::.: ::: :: ::::.::::.:  :::
ATFCA0 MEEDRESRVSAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSVLSRRWRNVWRYVPG
               10        20        30        40        50        60

          50        60        70        80           90       100  
K21C13 LELFTLQFTYPDREEIFVRFMDRFMEFKCRSRLKKFMIT---YVDCKGYRDRLMELIGTL
          :       . :             .:   :.:: .:   : : .    .. : ....
ATFCA0 ---F-------NSE-------------SC---LQKFKLTVNWYDDVQLETVHFTEWFNAV
                                         70        80        90    

            110         120       130       140       150       160
K21C13 VDHGLQHLYVFMHTF--DRVDFKRQNIYKSKTLVSLKLHNVELKNSDFVVSLPCLKILKL
       : . .:::... .:.  :.: .   ...   .:.::.:..: : : .:: ::: ::.. :
ATFCA0 VKRKVQHLHILDKTWGRDEVVIP-PTVFTCGSLISLNLYDVYLPNREFV-SLPSLKVIVL
          100       110        120       130       140        150  

              170       180       190       200       210       220
K21C13 ENICHGEDGPLVVEKLISGCSVLEDLELIRPFDIRTHKVLLLLRVSSQTLKSFTLHFAIY
       . .   ::  .. : :.::: :::.: .        .:.         .:.... .    
ATFCA0 DAVVFDED--FAFEMLVSGCPVLESLSV--------NKI---------NLNDISEN----
            160         170               180                      

               230       240       250       260       270         
K21C13 KDRTDF-SVEIDAPRLKYMTVEQSQSDSIVVKNLSSLFSIDIGTKFNPLRHE---D---L
        :  :.  : ::::::.:. ...... :...:: .::.. ::   :: :  :   :   :
ATFCA0 DD--DYLEVVIDAPRLHYLKLNDKRTASFIMKNHGSLLKADIDFVFN-LGSEYMFDPNYL
     190         200       210       220       230        240      

           280       290       300       310       320       330   
K21C13 RMRNVFYDFLTGISSVKHMIICLWSLQRFSPYSKPGLIPKFQNLYHLKAQMWSSSTHLLE
         :... :::.:.:.:: :::   .:: .  ::.   .: :.:.  :.... .   ..: 
ATFCA0 PTRHIIRDFLVGLSGVKDMIISSSTLQVIYDYSRCEQLPLFRNVSFLRVEFADYRWEMLP
        250       260       270       280       290       300      

           340       350       360       370         380           
K21C13 AFLESCPNLKNLILEYNVELDREQVDFTNVPQCLISTLEYVEIKEP--NEKSTIKL--VN
        :::::::::.:.: ...   .: ...   :. ....::::.: .:   : : :::  ::
ATFCA0 IFLESCPNLKSLVLGFSIPPGKEGANILPGPRRFLTSLEYVKIAKPMAAEASEIKLKLVN
        310       320       330       340       350       360      

     390       400       410             420       430             
K21C13 YFLENSAVLKKLTLRFSYSSSI-----YL-KSYKKLLTSTKLSPTCQVIFGC        
         . :.: : . .   : . .      .: :.:. .. .   : : :..           
ATFCA0 STM-NGA-LGNSSASVSGGEGAGGPAPFLVKTYE-MVDD---SSTDQIVSWSANNNSFIV
         370        380       390        400          410       420

ATFCA0 WNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHR
              430       440       450       460       470       480

ATFCA0 RKPIHSHSHPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEH
              490       500       510       520       530       540

ATFCA0 VDDMENRQKKLLNFLETAIRNPTFVKNFGKKVEQLDISAYNKKRRLPEVEQSKPPSEDSH
              550       560       570       580       590       600

ATFCA0 LDNSSGSSRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGD
              610       620       630       640       650       660

ATFCA0 PNTTLTKREGLPFAPEALELADTGTCPRRLLLNDNTRVETLQQRLTSSEETDGSFSCHLN
              670       680       690       700       710       720

ATFCA0 LTLASAPLPDKTASQIAKTTLKSQELNFNSIETSASEKNRGRQEIAVGGSQANAAPPARV
              730       740       750       760       770       780

ATFCA0 NDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRNTKNIEQLTL
              790       800       810       820       830    

Library scan:  0:00:00  total CPU time:  0:00:01