SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.12 (Universal genetic code) : 389 aa
 vs  library
 searching atfca06 library

    834 residues in     1 sequences
The best scores are:                              s-w
ATFCA06, 834 bases, 2F6 checksum.                  (834) 624

>>ATFCA06, 834 bases, 2F6 checksum.                  (834 aa)
Smith-Waterman score: 624;   33.023% identity in 430 aa overlap

                              10        20        30               
K21C13                MRNDIISELPDSLITQILLWLPTKDSVKTSV----YR------P-
                       : : . .::: :. .::: ::::: :: ::    .:      : 
ATFCA0 MEEDRESRVSAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSVLSRRWRNVWRYVPG
               10        20        30        40        50        60

                40                     50        60        70      
K21C13 -DGE--I--FGL-------------KFQEWIAAAVDRGIQHLDFETKNPSLFLKDS--MP
        ..:  .  : :             .: ::. :.: : .::: .  :.   . .:   .:
ATFCA0 FNSESCLQKFKLTVNWYDDVQLETVHFTEWFNAVVKRKVQHLHILDKT---WGRDEVVIP
               70        80        90       100          110       

           80        90       100       110       120       130    
K21C13 MNIYKSKTLVSLKLVCVELENPKFVVSLPCLKIMHLENNWYGYDAPLVVEKLIAGCLVLE
        ...   .:.::.:  : : : .:: ::: ::.. :.     .:  .. : :..:: :::
ATFCA0 PTVFTCGSLISLNLYDVYLPNREFV-SLPSLKVIVLDA--VVFDEDFAFEMLVSGCPVLE
       120       130       140        150         160       170    

          140       150       160       170       180       190    
K21C13 DLTVVRIHDMVIPDLPLLHVKSLTLKILRLVFDLEMMTTIPISVEIDAPKLEYMSFINRH
       .:.: .:.   . :.      : .        : ... ..     ::::.:.:... ...
ATFCA0 SLSVNKIN---LNDI------SEN--------DDDYLEVV-----IDAPRLHYLKLNDKR
          180                        190            200       210  

          200       210          220            230       240      
K21C13 SDTIMVKNLSSLFKLNLDTEFGYSS---LEP-----RDIIRDVLTGISSVRQMIISQRTL
       . ....:: .::.: ..:  :. .:   ..:     : :::: :.:.:.:..::::. ::
ATFCA0 TASFIMKNHGSLLKADIDFVFNLGSEYMFDPNYLPTRHIIRDFLVGLSGVKDMIISSSTL
            220       230       240       250       260       270  

        250       260       270       280       290       300      
K21C13 EVICRYSKLGPIPKFHHLSHLKAAFSSTSLQLLPAFLESCPNLKKLILDLYVSAEPEEID
       .::  ::.   .: :...: :.. :..   ..:: :::::::::.:.: .  :  : . .
ATFCA0 QVIYDYSRCEQLPLFRNVSFLRVEFADYRWEMLPIFLESCPNLKSLVLGF--SIPPGK-E
            280       290       300       310       320            

        310          320       330       340       350       360   
K21C13 LTNV---PRCITSTLECIEINKLIRKEATGVKLVHYFLENSPILKKLKPSFTDSPMSTMT
        .:.   :: . ..:: ..: : .  ::. .::    : :: .   :  : . : .:   
ATFCA0 GANILPGPRRFLTSLEYVKIAKPMAAEASEIKLK---LVNSTMNGALGNS-SAS-VSGGE
     330       340       350       360          370         380    

             370       380                                         
K21C13 NL--PLDHLYKMYLTARKRSRRCQVIIS                                
       .   :   : : :  .   :   :..                                  
ATFCA0 GAGGPAPFLVKTYEMVDDSSTD-QIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSF
          390       400        410       420       430       440   

ATFCA0 IRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVLQ
           450       460       470       480       490       500   

ATFCA0 EQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPT
           510       520       530       540       550       560   

ATFCA0 FVKNFGKKVEQLDISAYNKKRRLPEVEQSKPPSEDSHLDNSSGSSRRESGNIFHQNFSNK
           570       580       590       600       610       620   

ATFCA0 LRLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGDPNTTLTKREGLPFAPEALELADT
           630       640       650       660       670       680   

ATFCA0 GTCPRRLLLNDNTRVETLQQRLTSSEETDGSFSCHLNLTLASAPLPDKTASQIAKTTLKS
           690       700       710       720       730       740   

ATFCA0 QELNFNSIETSASEKNRGRQEIAVGGSQANAAPPARVNDVFWEQFLTERPGSSDNEEASS
           750       760       770       780       790       800   

ATFCA0 TYRGNPYEEQEEKRNGSMMLRNTKNIEQLTL
           810       820       830    

Library scan:  0:00:00  total CPU time:  0:00:01