SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.11 (Universal genetic code) : 388 aa
 vs  library
 searching atfca06 library

    834 residues in     1 sequences
The best scores are:                              s-w
ATFCA06, 834 bases, 2F6 checksum.                  (834) 671

>>ATFCA06, 834 bases, 2F6 checksum.                  (834 aa)
Smith-Waterman score: 671;   37.626% identity in 396 aa overlap

                             10        20        30        40      
K21C13               MEECDYINELPDSLLTQILLDLRTKDSVKTSVSSKRWRNLWLNVPG
                      .. : . .::: :: .:::.: ::: :: :: :.::::.:  :::
ATFCA0 MEEDRESRVSAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSVLSRRWRNVWRYVPG
               10        20        30        40        50        60

         50        60        70        80        90             100
K21C13 LDLFSLQFTNPHHEEGLIKFMDRFMESNCRSRLQKFMIRYFECNGYRD------RFMELI
              : :               :: :   :::: .     : : :      .: : .
ATFCA0 -------F-NS--------------ES-C---LQKFKLT---VNWYDDVQLETVHFTEWF
                                         70           80        90 

              110       120         130       140       150        
K21C13 GTVVDCGIQHLYVYMHTCNRVD--FIRQNIYKSKTLVSLKLYNVELKNPDFVVSLPCLKI
       ..::   .:::..  .: .: :   :  ...   .:.::.::.: : : .:: ::: ::.
ATFCA0 NAVVKRKVQHLHILDKTWGR-DEVVIPPTVFTCGSLISLNLYDVYLPNREFV-SLPSLKV
             100       110        120       130       140          

      160       170       180       190              200           
K21C13 LKLMKICYGEDGPLVVEKLISGCPVLEDLELIK-PF-DILTQD-----VIL------FLR
       . :  . . ::  .. : :.:::::::.: . :  . ::  .:     :..      .:.
ATFCA0 IVLDAVVFDED--FAFEMLVSGCPVLESLSVNKINLNDISENDDDYLEVVIDAPRLHYLK
     150       160         170       180       190       200       

          210                 220              230       240       
K21C13 VSSQ-T----LKS----LR--LYFATN-GSE---DPR---KRAIICDFLTVISSVRHMII
       .... :    .:.    :.  . :. : :::   ::     : :: :::. .:.:. :::
ATFCA0 LNDKRTASFIMKNHGSLLKADIDFVFNLGSEYMFDPNYLPTRHIIRDFLVGLSGVKDMII
       210       220       230       240       250       260       

       250       260       270       280       290       300       
K21C13 SGSILEELHSYSKLGWIPQFRNLYHLQASFFGTSLQLLPTFLESCPNLKNLIMDY----G
       :.: :. ...::.   .: :::.  :.. :     ..:: :::::::::.:.. .    :
ATFCA0 SSSTLQVIYDYSRCEQLPLFRNVSFLRVEFADYRWEMLPIFLESCPNLKSLVLGFSIPPG
       270       280       290       300       310       320       

            310       320       330       340         350       360
K21C13 AFKE-ENIDFHEVPQCLISTLEYVHINKLMMMEQSGIKL--VNYFIENSAVLKKLTLRFS
         ::  :: .   :. ....::::.: : :  : : :::  ::  . :.:.         
ATFCA0 --KEGANI-L-PGPRRFLTSLEYVKIAKPMAAEASEIKLKLVNSTM-NGALGNSSASVSG
         330         340       350       360        370       380  

              370       380                                        
K21C13 FFSSIESESYKKLLTSTKLSPTCQVIFV                                
                                                                   
ATFCA0 GEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSS
            390       400       410       420       430       440  

ATFCA0 FIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVL
            450       460       470       480       490       500  

ATFCA0 QEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNP
            510       520       530       540       550       560  

ATFCA0 TFVKNFGKKVEQLDISAYNKKRRLPEVEQSKPPSEDSHLDNSSGSSRRESGNIFHQNFSN
            570       580       590       600       610       620  

ATFCA0 KLRLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGDPNTTLTKREGLPFAPEALELAD
            630       640       650       660       670       680  

ATFCA0 TGTCPRRLLLNDNTRVETLQQRLTSSEETDGSFSCHLNLTLASAPLPDKTASQIAKTTLK
            690       700       710       720       730       740  

ATFCA0 SQELNFNSIETSASEKNRGRQEIAVGGSQANAAPPARVNDVFWEQFLTERPGSSDNEEAS
            750       760       770       780       790       800  

ATFCA0 STYRGNPYEEQEEKRNGSMMLRNTKNIEQLTL
            810       820       830    

Library scan:  0:00:00  total CPU time:  0:00:01