SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K21C13.10 (Universal genetic code) : 438 aa
 vs  library
 searching atfca06 library

    834 residues in     1 sequences
The best scores are:                              s-w
ATFCA06, 834 bases, 2F6 checksum.                  (834) 804

>>ATFCA06, 834 bases, 2F6 checksum.                  (834 aa)
Smith-Waterman score: 804;   39.512% identity in 410 aa overlap

                              10        20        30        40     
K21C13              MG-R-DRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPG
                     : : ::. .::: :: .::. :  .. .. :::: :::..:  :::
ATFCA0 MEEDRESRVSAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSVLSRRWRNVWRYVPG
               10        20        30        40        50        60

          50        60         70        80        90       100    
K21C13 LDVNVHDFPADGNLFESLMDKF-LEVNRGRLQNFKLNYESNLYYLMDRFVPWIATVVDRG
              :    :  :: ..:: : ::    .. .:  :. ..     :. :. .:: : 
ATFCA0 -------F----NS-ESCLQKFKLTVNW--YDDVQL--ET-VH-----FTEWFNAVVKRK
                           70          80                90        

          110       120           130       140       150       160
K21C13 IQHLDVTATDCPPWTID--FMPANI--CKSKTLVSLKLVNVGLDTPKFVVSLPCLKIMHL
       .::: .   :   :  :   .: ..  : :  :.::.: .: : . .:: ::: ::.. :
ATFCA0 VQHLHI--LD-KTWGRDEVVIPPTVFTCGS--LISLNLYDVYLPNREFV-SLPSLKVIVL
      100          110       120         130       140        150  

              170        180       190       200       210         
K21C13 EDIFYSPLIA-ENLISGCPVLEDLTIVRNHEDFLNFLRVMSQTLKNFRLTFDWGMGSNDF
       . . ..  .: : :.:::::::.:..  :.   .: :  .:.   :     :     .:.
ATFCA0 DAVVFDEDFAFEMLVSGCPVLESLSV--NK---IN-LNDISE---N-----D-----DDY
            160       170         180                   190        

      220       230       240       250       260         270      
K21C13 -SVEIDAPGLKYMSFRDSQSDRIVVKNLSSLVKIDLDTEFNLKFGLGSP--LEPEDLTKR
         : :::: :.:... :...  ...:: .::.: :.:  :::    ::   ..:. :  :
ATFCA0 LEVVIDAPRLHYLKLNDKRTASFIMKNHGSLLKADIDFVFNL----GSEYMFDPNYLPTR
           200       210       220       230           240         

        280       290       300       310       320       330      
K21C13 DIIRDFLTGISSVKHMIISHPTLEVLYRYSKIGQLPKFHNLYHLQAVFSSSLLQLLPAFL
        ::::::.:.:.:: ::::  ::.:.: ::.  ::: :.:.  :.. :..   ..:: ::
ATFCA0 HIIRDFLVGLSGVKDMIISSSTLQVIYDYSRCEQLPLFRNVSFLRVEFADYRWEMLPIFL
     250       260       270       280       290       300         

        340       350       360       370        380       390     
K21C13 EICPNLKNLILDYSISAEPEQIDFTNLPRCLISTLEYVEI-KQLTMREESGIKLVKYFLE
       : :::::.:.: .::    :  ..   :: ....::::.: : ..  : : ::: :  : 
ATFCA0 ESCPNLKSLVLGFSIPPGKEGANILPGPRRFLTSLEYVKIAKPMAA-EASEIKL-K--LV
     310       320       330       340       350        360        

         400       410       420       430                         
K21C13 NSAVLKKLTLSFIDSPMTNQESEIYMQLLTSTKRSRGCHVLIL                 
       ::..                                                        
ATFCA0 NSTMNGALGNSSASVSGGEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAE
         370       380       390       400       410       420     

ATFCA0 FSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIH
         430       440       450       460       470       480     

ATFCA0 SHSHPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDME
         490       500       510       520       530       540     

ATFCA0 NRQKKLLNFLETAIRNPTFVKNFGKKVEQLDISAYNKKRRLPEVEQSKPPSEDSHLDNSS
         550       560       570       580       590       600     

ATFCA0 GSSRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGDPNTTL
         610       620       630       640       650       660     

ATFCA0 TKREGLPFAPEALELADTGTCPRRLLLNDNTRVETLQQRLTSSEETDGSFSCHLNLTLAS
         670       680       690       700       710       720     

ATFCA0 APLPDKTASQIAKTTLKSQELNFNSIETSASEKNRGRQEIAVGGSQANAAPPARVNDVFW
         730       740       750       760       770       780     

ATFCA0 EQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRNTKNIEQLTL
         790       800       810       820       830    

Library scan:  0:00:00  total CPU time:  0:00:01