SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K1F13.9 (Universal genetic code) : 431 aa
 vs  library
 searching af017144 library

    369 residues in     1 sequences
The best scores are:                              s-w
AF017144, 369 bases, 1295 checksum.                (369)1285

>>AF017144, 369 bases, 1295 checksum.                (369 aa)
Smith-Waterman score: 1285;   48.130% identity in 401 aa overlap

                      10        20        30        40        50   
K1F13.       MKLLALFP-FLAIVIQLSCWELGTDALPSGGFVRTKGVQFSLNGYPYYANGFNA
                  ::  :::.:    :     .:  ..::. .:  .: ::: :.  ::::.
AF0171 MSYARRSCICGLFLLFLALV----C-----EA--NSGFIGVKDSHFELNGSPFLFNGFNS
               10        20                   30        40         

            60        70        80        90       100       110   
K1F13. YWLMYVASDPSQRSKISTAFQDASRHGLTVARTWAFSDGGYRALQYSPGSYNEDMFQGLD
       ::::.::.::..: :.. ...:::  ::.: ::::::::: :::: ::: :.: .:::::
AF0171 YWLMHVAADPTERYKVTEVLKDASVAGLSVCRTWAFSDGGDRALQISPGIYDERVFQGLD
      50        60        70        80        90       100         

           120       130       140       150       160       170   
K1F13. FALAEARRHGIKIILSFANNYESFGGRKQYVDWARSRGRPVSSEDDFFTDSLVKDFYKNH
       :..:::...:       :          :           .:..:.:.:  ..: . :::
AF0171 FVIAEAKKYG-------A----------Q-----------ISNDDEFYTHPMLKKYLKNH
     110              120                            130       140 

           180       190       200       210       220       230   
K1F13. IKAVLNRFNTFTKVHYKDDPTIMAWELMNEPRCPSDPSGRAIQAWITEMAAHVKSLDRNH
       :. :..:.:..::: :::::::::::::::::  .: ::.....:. :::. ::::: .:
AF0171 IEKVVTRLNSITKVAYKDDPTIMAWELMNEPRDQADYSGKTVNGWVQEMASFVKSLDNKH
             150       160       170       180       190       200 

           240       250        260       270       280       290  
K1F13. LLEAGLEGFYGQSSPQSKTLNPPG-QFGTDFIANNRIPGIDFVTVHSYPDEWFPDSSEQS
       :::.:.:::::.: :. :..:: : : :::::.:. :  :::.:.:.: :.:   .:...
AF0171 LLEVGMEGFYGDSIPERKSVNP-GYQVGTDFISNHLINEIDFATIHAYTDQWVSGQSDDA
             210       220        230       240       250       260

            300       310       320       330       340       350  
K1F13. QMDFLNKWLDAHIQDAQNVLHKPIILAEFGKSMKKPGYTPAQRDIVFNTVYSKIYGSAKR
       :. ...::. .: .::.:.:.::..::::::: .  :    .::: ...:: ..:. ::.
AF0171 QLVWMEKWITSHWEDARNILKKPLVLAEFGKSSRGQG----SRDIFMSSVYRNVYNLAKE
              270       280       290           300       310      

            360       370       380       390        400       410 
K1F13. GGAAAGGLFWQLLVNGIDNFQDGYGIILSQSSSTVNVISQQSRKLT-LIRKIFARMINVE
       ::. ::.: :::...:..:..::: :.:.:. ::...::.:.. .: : :..        
AF0171 GGTMAGSLVWQLMAHGMENYDDGYCIVLGQTPSTTQIISDQAHVMTALARSLN       
        320       330       340       350       360                

             420       430 
K1F13. KWKRARGQGQVGKRGHKINN

Library scan:  0:00:00  total CPU time:  0:00:00