SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K1F13.23 (Universal genetic code) : 644 aa
 vs  library
 searching atap22 library

    479 residues in     1 sequences
The best scores are:                              s-w
ATAP22, 479 bases, 16AF checksum.                  (479) 928

>>ATAP22, 479 bases, 16AF checksum.                  (479 aa)
Smith-Waterman score: 928;   35.214% identity in 585 aa overlap

               10        20        30        40        50        60
K1F13. MASDYYSSDDEGFGEKVGLIGEKDRFEAETIHVIEVSQHEADIQKAKQRSLATHEAEKLD
                                                                   
ATAP22                                       MEFLLFLGCITVFLYAGKGLLL
                                                     10        20  

               70        80        90         100       110        
K1F13. LATHEAEQLDLAIQEFSRQEEEEERRRTRELEND--AQIANVLQHEERERLINKKTALED
                    ..::  . . . :. :.::.   . : . :     : ::.. . .. 
ATAP22 PMGWLTKILKGSSHKFSDGQCNGRYREDRNLEGPRYSAIKGFL-----EFLIQEGSDFDK
             30        40        50        60             70       

      120        130           140       150       160       170   
K1F13. EEDEL-LARTLEES---LKENNR-RKMFEEQVNKDEQLALIVQESLNMEEYPIRLEEYKS
       :: :  .: .: :.   . .... .:..:    :.:     ..:. . .:   . :::  
ATAP22 EEIECAIALSLSEQEHVIPQDDKGKKIIEY---KSE-----TEEDDDDDED--EDEEY--
        80        90       100          110            120         

           180       190       200       210        220       230  
K1F13. ISRRAPLDVDEQFAKAVKESLKNKGKGKQFEDEQVKKDE-QLALIVQESLNMVESPPRLE
       .  :: :.. :.  . : ..        :.:.:. .. : ::    .:. ... .  :::
ATAP22 M--RAQLEAAEEEERRVAQA--------QIEEEEKRRAEAQL----EETEKLL-AKARLE
           130       140               150           160        170

            240       250       260       270       280       290  
K1F13. ENNNISTRAPVDEDEQLAKAVEESLKGKGQIKQSKDEVEGDGMLLELNPPPSLCGGCNFA
       :..   ..: ..::: ::::..::..           : :       .::        . 
ATAP22 EEEMRRSKAQLEEDELLAKALQESMN-----------V-G-------SPP-------RY-
              180       190                          200           

            300       310       320       330       340       350  
K1F13. VEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKSCYERYCYVCKEKK
        . :   :::    .:  .       :. :        .:    :..             
ATAP22 -DPG---NIL----QP--Y-------PFLI-------PSS----HRA-------------
                   210                           220               

            360       370       380       390       400       410  
K1F13. MKTYNNHPFWEERYCPVHEADGTPKCCSCERLEPRESNYVMLADGRWLCLECMNSAVMDS
             :::: ..::: :: ::::.::::::.::....:..: ::: :::::..::.::.
ATAP22 ------HPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDT
                  230       240       250       260       270      

            420       430           440       450           460    
K1F13. DECQPLHFDMRDFFEGLNMKIEKE--FPF--LLVEKQALNKAEKEEK----IDYQYEVVT
        :::::....:.:.:::.::.:.   . :   .  :.:. ..::. :    ::  .... 
ATAP22 HECQPLYLEIREFYEGLHMKVEQSNSYAFGGEISSKRAM-EGEKHVKPLYLID-TMDII-
        280       290       300       310        320        330    

          470       480       490       500       510       520    
K1F13. RGICLSEEQIVDSVSQRPVRGPNNKLVGMATESQKVTRECEVTAILILYGLPRLLTGYIL
         : :. :   : :  .      :::      :                  :::::: ::
ATAP22 --IYLKLE---DFVCLK------NKL------S------------------PRLLTGSIL
                340                                     350        

          530       540       550       560       570       580    
K1F13. AHEMMHAYLRLNGHRNLNNILEEGICQVLGHLWLDSQTYATADATADASSSASSSSRTPP
       :::::::.:::::. ::   .::::::::.:.::.:.::: ... .: .:: :::. .  
ATAP22 AHEMMHAWLRLNGYPNLRPEVEEGICQVLAHMWLESETYA-GSTLVDIASS-SSSAVV--
      360       370       380       390        400        410      

          590       600       610       620       630       640    
K1F13. AASASKKGEWSDFDKKLVEFCKNQIETDDSPVYGLGFRTVNEMVTNSSLQETLKEILRQR
       .:: ::::: :::.::: :: :.:::.:.: .:: :::  :. : . .:..:: .: :  
ATAP22 SAS-SKKGERSDFEKKLGEFFKHQIESDSSSAYGDGFRQGNQAVLKHGLRRTLDHI-RLT
           420       430       440       450       460        470  

ATAP22 GTFPKWI
              

Library scan:  0:00:00  total CPU time:  0:00:00