SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K1F13.22 (Universal genetic code) : 540 aa
 vs  library
 searching atap22 library

    479 residues in     1 sequences
The best scores are:                              s-w
ATAP22, 479 bases, 16AF checksum.                  (479) 969

>>ATAP22, 479 bases, 16AF checksum.                  (479 aa)
Smith-Waterman score: 969;   36.679% identity in 548 aa overlap

                                       10            20            
K1F13.                        M-WCLSCFKPSTKHDPSED----RFEEETNI----VT
                              : :  . .: :. :  :.     :..:. :.     .
ATAP22 MEFLLFLGCITVFLYAGKGLLLPMGWLTKILKGSS-HKFSDGQCNGRYREDRNLEGPRYS
               10        20        30         40        50         

       30        40          50        60        70        80      
K1F13. GISLYEDVILRQRRSEADQ--IEWAIQDSFNPQETSRCRQREEDDQIARGLQYVEETELD
       .:. . . .. :. :. :.  :: ::  :.. ::     :   ::.  . ..:  ::: :
ATAP22 AIKGFLEFLI-QEGSDFDKEEIECAIALSLSEQE-HVIPQ---DDKGKKIIEYKSETEED
      60         70        80        90           100       110    

         90       100       110       120       130       140      
K1F13. KSVVDEEDQQLSKIVEESLKEKGKSKQFEDDQVENDEQQALMVQESLYMVELSAQLEEDK
        .  :.::..     :: .. . .. . :. .:     :: . .:    .:  ::::: .
ATAP22 DD--DDEDED-----EEYMRAQLEAAEEEERRVA----QAQIEEEEKRRAE--AQLEETE
            120            130       140           150         160 

        150       160       170       180       190       200      
K1F13. NISTIPPLNEDAQLQKVIWESAKGKGQIEHFKDPVEEDGNLPRVDLNVNHPHSICDGCKS
       ..     : . :.:..   :  ..:.:.:  .: .   . : . ..::. :    :    
ATAP22 KL-----LAK-ARLEE--EEMRRSKAQLE--EDELLAKA-LQE-SMNVGSPPRY-DP---
                   170         180         190         200         

        210       220       230       240       250       260      
K1F13. AIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEFPGRKYKEHPFWKEKYCPFHEVDGTPK
           : ..  :    .:      :   :. .   :. ... :::: .:::: :: ::::.
ATAP22 ----G-NI--L----QP------Y---PFLI---PS-SHRAHPFWMQKYCPSHERDGTPR
                    210                    220       230       240 

        270       280       290       300       310       320      
K1F13. CCSCERLEPWGTKYVMLADNRWLCVKCMECAVMDTYECQPLHFEIREFFGSLNMKVEKE-
       ::::::.::  :::..: :.: ::..:.. :.:::.:::::..:::::. .:.::::.  
ATAP22 CCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDTHECQPLYLEIREFYEGLHMKVEQSN
             250       260       270       280       290       300 

            330       340       350       360       370       380  
K1F13. ---FPLLLVEKEALKKAEAQEKIVFKKPTMGPNGELVSLGTEPQKVVGGCEVTAILILYG
          :   .  :.:.. .: . : ..   ::     .. :  :    :  : .   :    
ATAP22 SYAFGGEISSKRAME-GEKHVKPLYLIDTMDI---IIYLKLED--FV--C-LKNKL----
             310        320       330          340                 

            390       400       410       420       430       440  
K1F13. LPRLLTGYILAHEMMHAWLRLNGTTSTQFVFANQYGESSQLKVLFGLITGYRNLKLELEE
        :::::: :::::::::::::::                           : ::. :.::
ATAP22 SPRLLTGSILAHEMMHAWLRLNG---------------------------YPNLRPEVEE
      350       360       370                                  380 

            450       460       470       480       490       500  
K1F13. GICQVLGHMWLESQTYSSSAAASSASSSSRTPAANASKKGAQSDYEKKLVEFCKDQIETD
       ::::::.::::::.::..:. .. ::::: . .. .:::: .::.:::: :: : :::.:
ATAP22 GICQVLAHMWLESETYAGSTLVDIASSSSSAVVSASSKKGERSDFEKKLGEFFKHQIESD
             390       400       410       420       430       440 

            510       520        530       540   
K1F13. DSPVYGVGFRKVNQMVSDSSL-HKILKSIQHWTKPDSNL   
       .: .:: :::. :: :    : : . ....:           
ATAP22 SSSAYGDGFRQGNQAV----LKHGLRRTLDHIRLTGTFPKWI
             450           460       470         

Library scan:  0:00:00  total CPU time:  0:00:00