SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K1F13.17 (Universal genetic code) : 668 aa
 vs  library
 searching atu9321513 library

    415 residues in     1 sequences
The best scores are:                              s-w
ATU9321513, 415 bases, 1820 checksum.              (415) 746

>>ATU9321513, 415 bases, 1820 checksum.              (415 aa)
Smith-Waterman score: 746;   34.744% identity in 449 aa overlap

               10        20        30        40        50        60
K1F13. MASEKSTSKGQAWFCTTGLPSDIEIEVDDMTFHLHKFPLMSKSRKLHRLITEQETRSSSS

               70        80        90       100       110       120
K1F13. MALITVIDPKVEETDKKGKGHEIEDDKEEEEVEEQEIEENGYPHIKLEDFPGSSESFEMV

              130       140       150       160       170       180
K1F13. AKFCYGVKMDLSASTVVPLRCAAEHLEMTEEYSPDNLISKTERFLSHSVYKSLRESIKAL

              190       200       210       220       230       240
K1F13. KACESVSPLAGSLGITEQCIDSIVSRASSADPSLFGWPVNDGGGRGNISATDLQLIPGGA

              250        260       270        280       290        
K1F13. AKSRKKPSRDS-NMELWFEDLTQLSLPIFKTVILSMRS-GDLSSDIIESCLICYAKKHIP
             : :   :   : :.:  :.. .:. :. ::.. :   :..  : .: :..: . 
ATU932     MFPCRTPPNW--WTEELCILDVDFFSDVVSSMKQRGVKPSSLA-SAIITYTEKSLR
                   10          20        30        40         50   

      300             310        320       330       340       350 
K1F13. GILR--SNR--K--PPSSSSTAVSE-NEQRELLETITSNLPLDKSSISSTTRFLFGLLRT
        ..:  :.:  :   :... .  .: ..::.:...:.: :: ::. .   . :: .::: 
ATU932 DLVRDHSGRGVKYSDPGDNES--DERSQQRDLVQSIVSLLPSDKGLF--PVNFLCSLLRC
            60        70          80        90         100         

             360       370       380       390       400       410 
K1F13. AIILNAAEICRDLLERKIGSQLERATLDDLLVPSYSYLNETLYDVDLVERILGHFLDTLE
       :..:...  :.. ::..:.  ::....::::.::..: .: : :.: :.::.. :..  :
ATU932 AVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEK-E
     110       120       130       140       150       160         

             420            430       440       450         460    
K1F13. QSNTAIVEV-D---GK-SPSLMLVGKLIDGFLAEIASDANLKSDKFYNLAIS-L-PDQAR
       . :... .  :   :  : ::. :.: .:..:::::. ..:  .:: : ::. : : .::
ATU932 K-NVGVFNGGDFNRGVCSVSLQRVAKTVDSYLAEIATYGDLTISKF-N-AIANLVPKSAR
       170       180       190       200       210         220     

          470       480       490       500       510       520    
K1F13. LYDDGLYRAVDVYLKAHPWVSEAEREKICGVMDCQKLTLEACTHAAQNERLPLRAVVQVL
         :: ::::.:..::::: ..: ::::.:. ::  ::. .:  ::.::.:::.  :...:
ATU932 KSDDDLYRAIDIFLKAHPNLDEIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHAL
         230       240       250       260       270       280     

          530       540       550       560       570       580    
K1F13. FFEQLQLRHAIAGTLLAAQSPSTSQSTEPRPSAAIRNLTITEEDGDEAEGERQVDAGKWK
       ...::.::   .:  .: :        : :   :.  ... :  . ..... :.:.    
ATU932 YYDQLKLR---SG--VAEQ--------EER---AV--VVLPE--ALKTRSQLQADT----
         290                    300              310       320     

           590       600       610       620       630          640
K1F13. KTV-RENQVLRLDMDTMRTRVHRLERECSNMKKVIAKIDKEGSSPATTTDRPR-SW--SI
        :. .::..:: ..  :.  :  ...   :  :  :  .. .::  ... . . ..  :.
ATU932 -TLAKENEALRSELMKMKMYVSDMQK---N--KNGAGASSSNSSSLVSSKKSKHTFFSSV
              330       340            350       360       370     

                 650         660                
K1F13. TKKFGCK---FKTQVCD-SH-EATM--VD-HRSRRS     
       .::.: :   ::.   : :: .  .  ::  . ::      
ATU932 SKKLG-KLNPFKNGSKDTSHIDEDLGGVDITKPRRRRFSIS
         380        390       400       410     

Library scan:  0:00:00  total CPU time:  0:00:00