SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K1F13.15 (Universal genetic code) : 285 aa
 vs  library
 searching aapc_pencl library

    329 residues in     1 sequences
The best scores are:                              s-w
AAPC_PENCL, 329 bases, 704 checksum.               (329) 465

>>AAPC_PENCL, 329 bases, 704 checksum.               (329 aa)
Smith-Waterman score: 465;   32.390% identity in 318 aa overlap

               10         20        30        40        50         
K1F13. MAIVSVSNSFLTFNSPN-QLRFSRRRFSAMASSTTGVRVAEGEGNLPKLVLTSPQNSEAE
                     ::. ::  :   :. .... .:         : :.:: . .:  ::
AAPC_P  MAAPAPAGAAASPSPKPQLP-S--PFAELVKTPSG---------LEKVVLRGARNCCAE
                10        20           30                 40       

      60        70        80           90                          
K1F13. IYLFGGCITSWKVASGKDLLFVRPDAVFN--K-IK---PI-----------------RNM
       :::.:: .::::  .:..:::.   :.:.  : :.   ::                 :: 
AAPC_P IYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNR
        50        60        70        80        90       100       

        100             110       120       130         140        
K1F13. DWSVVDSQ------NADDNAAVTLELKDGPYSRAMWDFAFQALYKVIVG--AD-SLSTEL
        ::. :..      :   .: : : :. .  .  .:  .:.   .: .:  .: ::....
AAPC_P FWSI-DNDPPPLPVNPAIKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRI
       110        120       130       140       150       160      

       150       160       170       180        190       200      
K1F13. KITNTDDKPFSFSTALHTYFRASSAGASVRGLKGCKTLNKDP-DPKNPIEGKEDR-----
       . :::: .:::.. : :::: .:.  . :: ..: .:.  :  :  : ...:: :     
AAPC_P RNTNTDGRPFSYTFAYHTYFFVSDI-SEVR-VEGLETM--DYLD--N-LKAKE-RFTEQG
        170       180       190         200            210         

             210       220        230       240           250      
K1F13. DAVTFPGFVDTVYLDAPNELQF-DNGLGDKIIIKNTNWSDAVLWNPHTQ----ME----A
       ::..: . :: ::: ::... . :.     ... . .  :::.:::  .    :.    :
AAPC_P DAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDA
      220       230       240       250       260       270        

            260        270       280                      
K1F13. CYRDFVCVENAKL-GDVKLEPGQSWTATQLLSIS                 
        :....::: : .   . :.::. : .   ::                   
AAPC_P EYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSSYCSGQLDPLKVLHG
      280       290       300       310       320         

Library scan:  0:00:00  total CPU time:  0:00:00