SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K1F13.10 (Universal genetic code) : 249 aa
 vs  library
 searching bex_bacsu library

    301 residues in     1 sequences
The best scores are:                              s-w
BEX_BACSU, 301 bases, A7 checksum.                 (301) 559

>>BEX_BACSU, 301 bases, A7 checksum.                 (301 aa)
Smith-Waterman score: 559;   36.290% identity in 248 aa overlap

                                                                   
K1F13.                                                          MIL
                                                                 :.
BEX_BA MTNESFKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIF
               10        20        30        40        50        60

            10        20        30        40        50           60
K1F13. YDTPGVIEKKMHRLDTMMMKNVRDAAINADCVVILVDACKTPTNIEEVLKEGLGD---LE
        :::: :.:  :.:  .::: ....  ..: ......:       ::    : ::   .:
BEX_BA IDTPG-IHKPKHKLGDFMMKVAQNTLKEVDLILFMINA-------EE--GYGKGDEFIIE
                70        80        90                100       110

                   70        80        90       100       110      
K1F13. K----KPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILS
       :    . :..:..:: : :.: ..   .. :.:     :..:.::  :..:: .   : .
BEX_BA KLQTMSTPVFLIVNKIDKIHPDQLLLLIDEYRKRYPFKEIVPISALEGNNIETLLAQIEA
              120       130       140       150       160       170

        120       130       140       150       160       170      
K1F13. KLPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVLSYKTRPAAKDFI
        :: :: .::.: :..:::::..::..:::..   :.:.:..  : . : : .  ..  .
BEX_BA YLPEGPQFYPSDQVTDHPERFIISELIREKVLHLTREEIPHSIAVAIESIKGQDNGSVHV
              180       190       200       210       220       230

        180       190       200       210       220       230      
K1F13. QVEVVVDKNSQKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVEVKVKENWRQDEGL
        . .::...::: :.:::.:. :: ..  :: ::: .: ..:.::. :::...::.  . 
BEX_BA AATIVVERDSQKGIVIGKKGSLLKEVGKRARADIEALLGSRVYLELWVKVQKDWRNKMSQ
              240       250       260       270       280       290

        240         
K1F13. LKYYGYGGQIRAM
       :. .:.       
BEX_BA LRDFGFKEDEY  
              300   

Library scan:  0:00:00  total CPU time:  0:00:00