SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K19M22.11 (Universal genetic code) : 530 aa
 vs  library
 searching pir::JC5229 library

    557 residues in     1 sequences
The best scores are:                              s-w
pir||JC5229                                        (557)2707

>>pir||JC5229                                        (557 aa)
Smith-Waterman score: 2707;   72.983% identity in 533 aa overlap

                                               10        20        
K19M22                                 MTNTTKLCSSKPIVTVNGQFPGPTIVAR
                                       : :::.::::::::::::.:::::: ::
pir||J MNSWIRLFIVLAACLFPLVVECRIRHYKFNVVMKNTTRLCSSKPIVTVNGKFPGPTIYAR
               10        20        30        40        50        60

       30        40        50        60        70        80        
K19M22 EGDTILIKVVNHVKYNVSIHWHGIRQLRTGWADGPAYITQCPIQPGQNYLHNFTLTGQRG
       ::::.:.:::::::::.::::::::::::::::::::::::::::::::..:::.:::::
pir||J EGDTVLVKVVNHVKYNLSIHWHGIRQLRTGWADGPAYITQCPIQPGQNYVYNFTITGQRG
               70        80        90       100       110       120

       90       100       110       120       130       140        
K19M22 TLWWHAHILWLRATVHGAIVILPKLGVPYPFPKPYKEKTIVLSEWWKSDVEELINEASRI
       ::.::::::::::::::::::::.:::::::::: .: ...:.::::::.: .:::: . 
pir||J TLFWHAHILWLRATVHGAIVILPNLGVPYPFPKPNHEAVVILAEWWKSDTEAVINEAIKS
              130       140       150       160       170       180

      150       160       170       180       190       200        
K19M22 GTAPSASDAHTINGHSGSISNCPSQSSYGLPVRAGKTYMLRIINAALNEELFFKIAGHVL
       : ::..::::::::: : .::: ::..: : :  :::::::.:::::::::::::::: .
pir||J GLAPNVSDAHTINGHPGPVSNCASQGGYKLNVDPGKTYMLRVINAALNEELFFKIAGHKM
              190       200       210       220       230       240

      210       220       230       240       250       260        
K19M22 TVVEVDAVYTKPYKTDTVFIAPGQTTNVLLTANANAGSNYMVAATTFTDAHIPYDNVTAT
       :::::::.: ::.::::. :::::::::..::: ..:. :::::. : :: :  ::::: 
pir||J TVVEVDATYIKPFKTDTIVIAPGQTTNVIVTANQGSGK-YMVAASPFMDAPIAVDNVTAI
              250       260       270        280       290         

      270       280       290       300       310       320        
K19M22 ATLHYIGHTSTVSTSKKTVLASLPPQNATWVATKFTRSLRSLNSLEYPARVPTTVEHSLF
       ::::: :   : ..:. . :.: ::.::: ::. :  ::::::: .:::.::  ..::::
pir||J ATLHYSG---TQGNSHIS-LTSTPPKNATPVANTFLDSLRSLNSKKYPAKVPKKIDHSLF
     300          310        320       330       340       350     

      330       340         350       360       370       380      
K19M22 FTVGLGANPCQSCN--NGVRLVAGINNVTFTMPKTALLQAHFFNISGVFTDDFPAKPSNP
       :::::: ::: .:.  :: :.::..:::::.:: .::::::::. .:::: ::::.:   
pir||J FTVGLGINPCPTCKQGNGSRVVASVNNVTFVMPTVALLQAHFFGTKGVFTTDFPANPPFA
         360       370       380       390       400       410     

        390        400       410       420       430       440     
K19M22 YDYTAPVKLG-VNAATMKGTKLYRLPYNATVQIVLQNTAMILSDNHPFHLHGFNFFEVGR
       ..::.    : .: :::.:::.::: :: :::.:::.:..:  .:::.:::::::: ::.
pir||J FNYTGT---GPTNLATMNGTKVYRLRYNDTVQLVLQDTGIIAPENHPIHLHGFNFFLVGK
         420          430       440       450       460       470  

         450       460       470       480       490       500     
K19M22 GLGNFNPEKDPKAFNLVDPVERNTVGVPAGGWTAIRFIADNPGVWFMHCHLELHTTWGLK
       :.:::::. ::: :::::::::::::::::::.:::: ::::::::::::::.:::::::
pir||J GIGNFNPKTDPKNFNLVDPVERNTVGVPAGGWVAIRFRADNPGVWFMHCHLEIHTTWGLK
            480       490       500       510       520       530  

         510       520       530
K19M22 MAFVVDNGHGPDQSLLPPPADLPKC
       ::..::::.::..:::::: :::::
pir||J MAWLVDNGKGPNESLLPPPKDLPKC
            540       550       

Library scan:  0:00:00  total CPU time:  0:00:00