SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K19E1.13 (Universal genetic code) : 587 aa
 vs  library
 searching pc4168 library

    582 residues in     1 sequences
The best scores are:                              s-w
PC4168, 582 bases, 1A6 checksum.                   (582)1673

>>PC4168, 582 bases, 1A6 checksum.                   (582 aa)
Smith-Waterman score: 1673;   46.218% identity in 595 aa overlap

               10        20        30        40           50       
K19E1. MGYDRLGPSGPSNPNQKDPATSLPELQKKTKTKLILFTLAV---LVVGVVCFGIFAGIRA
                                  :..: :::: . :.   :....:  :: :   .
PC4168                   EFISKFSDFKNNK-KLILSSAAIALLLLASIV--GIAA--TT
                                 10         20        30           

        60          70         80        90        100       110   
K19E1. VDSGKTEPKLTR--KPTQAISRT-CSKSLYPNLCIDTLLDFPGS-LTADENELIHISFNA
       ....:.. :.:   . ..:: .. ::..:::.::....    :. ::. ..:.:. :.: 
PC4168 TNQNKNQ-KITTLFSTSHAILKSVCSSTLYPELCFSAVAATGGKELTS-QKEVIEASLNL
        40         50        60        70        80         90     

           120        130         140       150       160       170
K19E1. TLQKFSKALYT-SSTITYTQ-MPPR-VRSAYDSCLELLDDSVDALTRALSSVVVVSGDES
       : .  ..  .. .. :.  . . :: : . .: ::: .:...: :  :. ..     ..:
PC4168 TTKAVKHNYFAVKKLIAKRKGLTPREVTALHD-CLETIDETLDELHVAVEDLHQYPKQKS
         100       110       120        130       140       150    

                  180       190         200        210       220   
K19E1. ---HSDVM-TWLSSAMTNHDTCTDGF--DEIEGQGGEVKDQVI-GAVKDLSEMVSNCLAI
          :.: . : .:::.::. :: :::  :. . .   :.  .. : :. . .: :: ::.
PC4168 LRKHADDLKTLISSAITNQGTCLDGFSYDDADRK---VRKALLKGQVH-VEHMCSNALAM
          160       170       180          190        200       210

           230                     240          250       260      
K19E1. FAGKVKDLSGVPVVN--------N------RKL---LGTEETEELPNWLKREDRELL-GT
           .:... . ..:        :      :::    :  ...  :.::.  ::.:: : 
PC4168 ----IKNMTETDIANFELRDKFFNLHQQQQRKLKEVTGDLDSDGWPKWLSVGDRRLLQG-
                  220       230       240       250       260      

         270       280       290       300       310       320     
K19E1. PTSAIQADITVSKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKAGRYEEENLKVGRKKTNL
         :.:.:: ::. :::: : . . :.  :::.:..::::..::: :.: :..: .::::.
PC4168 --STIKADATVADDGSGDFDNGSAAVAAAPEKSNKRFVIHIKAGVYRE-NVEVTKKKTNI
           270       280       290       300       310        320  

         330       340       350       360       370       380     
K19E1. MFIGDGKGKTVITGGKSIADDLTTFHTATFAATGAGFIVRDMTFENYAGPAKHQAVALRV
       ::.:::.:::.:::.....:  ::::.:: ::.:  :..::.::.: :::.:::::::::
PC4168 MFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRV
            330       340       350       360       370       380  

         390       400       410       420       430       440     
K19E1. GGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMA
       :.: .. :.:....:::.:::::::::: .:.: :::::::::::..::.:.: ::.: .
PC4168 GSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNS
            390       400       410       420       430       440  

         450       460       470       480       490       500     
K19E1. QQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSD
        ::  .:::.:.:::::::: :. :.. .: :: : ::..::::::::: :::.: :.::
PC4168 GQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSD
            450       460       470       480       490       500  

         510       520       530       540       550       560     
K19E1. MGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVA
       ..: : :.:: ::.: ::::.: : ::.:.: :.: ..:::: ::.:::: .::. ::..
PC4168 ISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAG
            510       520       530       540       550       560  

         570       580        
K19E1. QFISGSSWLPSTGVSF-FSGLSQ
       :::.:..:: :::  : :: :: 
PC4168 QFIGGGGWLASTG--FPFS-LSL
            570          580  

Library scan:  0:00:00  total CPU time:  0:00:02