SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K18L3.P3 (Universal genetic code) : 64 aa
 vs  library
 searching atfca636 library

    600 residues in     1 sequences
The best scores are:                              s-w
ATFCA636, 600 bases, 14DF checksum.                (600) 135

>>ATFCA636, 600 bases, 14DF checksum.                (600 aa)
Smith-Waterman score: 135;   44.444% identity in 54 aa overlap

                                             10        20        30
K18L3.                               IESFVARYLLQAAVHTIWGERNRRRHGEPP
                                             : .:  :   .:::.::::: :
ATFCA6 MYLIEPVRVDNSETTQFPASTLLSNRTLATLELELCHSLSDAKNHCQRNERNQRRHGESP
               10        20        30        40        50        60

                40        50         60                            
K18L3. N-PGTRLTQRIDKQVRNCISAINASGDSRY-DKALQ                        
       . :  :: . :::.::: .......:  .: :                            
ATFCA6 SQP-ERLISLIDKNVRNRLTTMSGGGVLKYKDGMRKEVETAEKAILFKEELEMIDSLQRL
                70        80        90       100       110         

ATFCA6 GISYHYKHEIHDILRKIHDQHGEIERETQDLHATSLEFILLRQHGFDVSQDAFDVFISET
     120       130       140       150       160       170         

ATFCA6 GEFRKTLHSDIKGLLSLYEASYFSMDSEFKLKETRIYANKRLSEFVAESSKTICREDETY
     180       190       200       210       220       230         

ATFCA6 ILEMVKRALETPYHWSIRRLEARWYINVYEKKHEMNPLLLEFAAIDFNMLQANHQEELKL
     240       250       260       270       280       290         

ATFCA6 ISSTGLMKQLDFVRDRITESYFWTIGIFYEPEFKYCRKILTKIFMLIVIMDDIYDIYGTL
     300       310       320       330       340       350         

ATFCA6 EELELFTNVVEKWDVNHVERLPNYMRMCFLFLYNEINQIGYDVLRDKGLNVIPYLKQVWT
     360       370       380       390       400       410         

ATFCA6 DLFKTFLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKN
     420       430       440       450       460       470         

ATFCA6 HSVVRSCATILRLANDLATSTEEMARGDSPKSVQCYMYETRASEEEARRHMQSMISDSWD
     480       490       500       510       520       530         

ATFCA6 IINSDLKTAHTSSLPRGFLAAAANLNRVVQCIYRHGDGHGSPEKTKTVDYIQSVLFNPVP
     540       550       560       570       580       590         

ATFCA6 L
     600

Library scan:  0:00:00  total CPU time:  0:00:00