SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K18L3.P1 (Universal genetic code) : 387 aa
 vs  library
 searching atfca114 library

   1489 residues in     1 sequences
The best scores are:                              s-w
ATFCA114, 1489 bases, 838 checksum.                (1489)1482

>>ATFCA114, 1489 bases, 838 checksum.                (1489 aa)
Smith-Waterman score: 1482;   55.198% identity in 404 aa overlap

ATFCA1 MGSYVPPPANPVTRPPINNGDQIRYPVDQYENPYYLHSADHAGLILVSDRLTTASDFHSW
               10        20        30        40        50        60

ATFCA1 RRSILMALNVRNKLGFINGTITKPPEDHRDFGAWSRCNDIVSTWLMNSVDKKIGQSLLYI
               70        80        90       100       110       120

ATFCA1 ATVQGIWNNLLSRFKQDDAPRIFDIEQKLSKIEQGSMDISTYYTALLTLWEEHRNYVELP
              130       140       150       160       170       180

ATFCA1 VCTCGRCECDAAVKWEHLQQRSRVTKFLKELNEGFDQTRRHILMLKPIPTIKEAFNMVTQ
              190       200       210       220       230       240

ATFCA1 DERQRNVKPLTRVDSVAFQNTSMINEDENAYVAAYNTVRPNQKPICTHCGKVGHTIQKCY
              250       260       270       280       290       300

ATFCA1 KVHGYPPGMKTGNTGYTYKPNPQLHVQPRMPMMPQPRMQFPAQPYTNSMQKANVVAQVYA
              310       320       330       340       350       360

ATFCA1 ETGAYPSEGYSQAPMMNPYGSYPMPHITHGGNNLSLQDFTPQQIEQMISQFQAQVQVPEP
              370       380       390       400       410       420

ATFCA1 AASSSNPSPLATVSEHGFMALTSTSGTIIPFPSTSLKYENNDLKFQNHTLSALQKFLPSD
              430       440       450       460       470       480

ATFCA1 AWIIDSGASSHVCSDLAMFRELKSVSGTVHITQKLILHNVLHVPDFKFNLMSVSSLVKTI
              490       500       510       520       530       540

ATFCA1 SCSAHFYVDCCLIQELSQGLMIGRGRLYHNLYILETENTSPSTSTPAACLFTGSVLNDGH
              550       560       570       580       590       600

ATFCA1 LWHQRLGHPSSVVLQKLKRLAYISHNNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVD
              610       620       630       640       650       660

ATFCA1 DCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPELGFTEIVKEHGMLH
              670       680       690       700       710       720

ATFCA1 HFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLLNN
              730       740       750       760       770       780

ATFCA1 KSPYELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDL
              790       800       810       820       830       840

ATFCA1 ESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILPLPAPLHFVETMPLIDEDSLIP
              850       860       870       880       890       900

ATFCA1 TTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDSNAVPITRSKRTTRAPSYLSEYHCS
              910       920       930       940       950       960

ATFCA1 LVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIFAYNTE
              970       980       990      1000      1010      1020

ATFCA1 TEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYNPDGTV
             1030      1040      1050      1060      1070      1080

                      10        20        30         40        50  
K18L3.        VAKGFTQQEEVDYFDTFSPVAKLASFRLLLGLAVGKGWS-TSIDVTSAFLHSD
              ::.:::::: .:..:::::::::.: ...::::.  ::. :..::..::::.:
ATFCA1 ERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDAFLHGD
             1090      1100      1110      1120      1130      1140

             60        70        80        90       100       110  
K18L3. LEKEIFMSLPEEYAPPNGASLPFNHVCRLLKSIYRLKQASRQWYKKSIIAILVYVDDILI
       :..:::::::. :.:: :. :: : ::::::::: ::::::::::. ..: :::.:::.:
ATFCA1 LDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR-FVAALVYIDDIMI
             1150      1160      1170      1180       1190         

            120       130       140       150       160       170  
K18L3. VRNDDDDVRSVKDTLGAHFKTKDLGEAKFFLGLLWFVGCKPKFVPMDPKVPLTKDTGTFL
       . :.: .:...:  : ..:: :::: :.::::::   ::::. .:::: . :..: :: :
ATFCA1 ASNNDAEVENLKALLRSEFKIKDLGPARFFLGLL---GCKPSSIPMDPTLHLVRDMGTPL
    1200      1210      1220      1230         1240      1250      

            180       190       200       210        220       230 
K18L3. ENARPYREIIERLLYLCITRPNITFVVNRLSQFLFCPTDVVHLQAAH-ILKYLKNNPGQG
        :   ::..: ::::: ::::.::..:..::::.  :.:. :::::: .:.:.: :::::
ATFCA1 PNPTAYRKLIGRLLYLTITRPDITYAVHQLSQFISAPSDI-HLQAAHKVLRYIKANPGQG
       1260      1270      1280      1290       1300      1310     

             240       250       260       270          280        
K18L3. FFYSASTDFCLNGFTGADWGTCIDSRRCTSGICVFLGIPLIT-KS--QDIVSNSNNEAKY
       ..:::. ..:::::. :::..: :.::  ::.:..::  ::. ::  : ..: :..:..:
ATFCA1 LMYSADYEICLNGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEY
        1320      1330      1340      1350      1360      1370     

      290       300        310         320        330       340    
K18L3. RSMAMTKKKLLWLI-MLRNLHIKTNTSA-LFCD-K-ILTTHLVNNLIFHEKTKHVEIDCQ
       ::::..  ...::  .:..:::  .  : :::: :  : . :  : .:::.:::.::::.
ATFCA1 RSMAQATCEIIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSL--NPVFHERTKHIEIDCH
        1380      1390      1400      1410        1420      1430   

                 350        360       370       380            
K18L3. YVK-------LKVSHIDT-NQLGGILTKPLHPGLFYSLISRLSISSLFNPS     
        :.       ::. :. : :: . :::: :::: :. :. ..:.:::: :.     
ATFCA1 TVRDQIKAGNLKALHVPTENQHADILTKALHPGPFHHLLRQMSLSSLFLPNKPVRS
          1440      1450      1460      1470      1480         

Library scan:  0:00:00  total CPU time:  0:00:02