SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K18L3.9 (Universal genetic code) : 374 aa
 vs  library
 searching atap2241 library

    381 residues in     1 sequences
The best scores are:                              s-w
ATAP2241, 381 bases, 1252 checksum.                (381) 696

>>ATAP2241, 381 bases, 1252 checksum.                (381 aa)
Smith-Waterman score: 696;   31.000% identity in 400 aa overlap

               10        20        30        40        50        60
K18L3. MKFVDVVERPREMPTFPQSFPMNGGDGPHSYIHNSSYQKVAIDGVKERTSEAILEKLDLE
                 ..:    . : :.::::  :: .::: :: : : .:. : :. :..:   
ATAP22        MDKKDME---REFYMTGGDGKTSYARNSSLQKKASDTAKHITLET-LQQL---
                         10        20        30        40          

               70        80        90       100       110          
K18L3. FLNRNSEENILRIVDFGCSIGPNTFDVVQNIIDTVKQKRLKENKTYIGAPL-EFQVCFND
       .  .... . : :.:.::: ::::.... ..: ::.  . .:    :  :: ::.. .::
ATAP22 Y--KETRPKSLGIADLGCSSGPNTLSTITDFIKTVQVAHHREIP--I-QPLPEFSIFLND
           50        60        70        80           90       100 

     120       130                  140       150       160        
K18L3. QPNNDFNTLFRTQP-F---FSRKE-------YFSVGVPGSFHGRVLPKNSLHIGHTSYTL
        :.:::: .:.. : :   ..: .        : .. ::::.::..:.:..:. ..:..:
ATAP22 LPGNDFNFIFKSLPDFHIELKRDNNNGDCPSVFIAAYPGSFYGRLFPENTIHFVYASHSL
             110       120       130       140       150       160 

      170                 180       190         200       210      
K18L3. HWLSN----------VPQHVCDKKSPALNKSYIQ-CNNLVDE-VTKAYKIQFRKDFGGFL
       ::::.          ::  . :... ..::. .. :. : .: :.:::  ::..::. ::
ATAP22 HWLSKILSCVYWSLQVPTALYDEQGKSINKGCVSICS-LSSEAVSKAYCSQFKEDFSIFL
             170       180       190        200       210       220

        220       230         240         250       260       270  
K18L3. EARAEELVSGGLMILS--GQCLPDGIPK--ALTWQGVVIDMIGDCLMDLAKLGITSKEKI
       . :..:.::.: :.:   :.  :: . .  .. :.     ...  . ::.  : : .::.
ATAP22 RCRSKEMVSAGRMVLIILGREGPDHVDRGNSFFWE-----LLSRSIADLVAQGETEEEKL
              230       240       250            260       270     

            280       290       300         310            320     
K18L3. ELFSLPTYIPHISEFKANIEQNENFNVETME--EISHPMDYMPLTNDF-----ITSMFRA
       . ...  : :  .:........ .:..: .:  :...  :     .:.     ...  ::
ATAP22 DSYDMHFYAPSADEIEGEVDKEGSFELERLEMLEVKK--DKGNTEGDISYGKAVAKTVRA
         280       290       300       310         320       330   

         330       340       350        360       370     
K18L3. ILNTIIEEHFGEGVVNELFSRLAKRLDKYPIDF-KRCKKYVNYFIVLKRK 
       . .... .:::: ....::.   . .:    .. :.  . ... .::..: 
ATAP22 VQESMLVQHFGEKILDKLFDTYCRMVDD---ELAKEDIRPITFVVVLRKKL
           340       350       360          370       380 

Library scan:  0:00:00  total CPU time:  0:00:00