SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K18L3.11 (Universal genetic code) : 374 aa
 vs  library
 searching atap2241 library

    381 residues in     1 sequences
The best scores are:                              s-w
ATAP2241, 381 bases, 1252 checksum.                (381) 700

>>ATAP2241, 381 bases, 1252 checksum.                (381 aa)
Smith-Waterman score: 700;   32.258% identity in 403 aa overlap

               10        20        30        40        50        60
K18L3. MKHVGVVEKQREMPTFPQSFPMNGGDGPHSYIHNSSYQKVAIDGAKEKTSEAILKNLDLE
             ..: ..:    . : :.::::  :: .::: :: : : ::. : :. :..:  :
ATAP22       MDK-KDME---REFYMTGGDGKTSYARNSSLQKKASDTAKHITLET-LQQLYKE
                         10        20        30        40          

               70        80        90       100       110          
K18L3. LLNRNSDENILRIADFGCSIGPNTFEVVQNIIDTVKQKNLKENNAYIGAPL-EFQVCFND
         .: ..   : :::.::: ::::. .. ..: ::.  . .:    :  :: ::.. .::
ATAP22 --TRPKS---LGIADLGCSSGPNTLSTITDFIKTVQVAHHRE--IPI-QPLPEFSIFLND
        50           60        70        80           90       100 

     120       130          140               150       160        
K18L3. QPNNDFNTLFRTQP---ISSKQAYL-----SVGV---PGSFHGRVLPKNSLHIGHITYAL
        :.:::: .:.. :   :  :.        :: .   ::::.::..:.:..:. . ...:
ATAP22 LPGNDFNFIFKSLPDFHIELKRDNNNGDCPSVFIAAYPGSFYGRLFPENTIHFVYASHSL
             110       120       130       140       150       160 

      170                 180       190         200       210      
K18L3. HWLST----------VPQHVCDKKSPALNKSYIQ-CNNLVEE-VTEAYRVQFKKDMGDFL
       ::::           ::  . :... ..::. .. :. :  : :..::  :::.:.. ::
ATAP22 HWLSKILSCVYWSLQVPTALYDEQGKSINKGCVSICS-LSSEAVSKAYCSQFKEDFSIFL
             170       180       190        200       210       220

        220       230         240         250       260       270  
K18L3. GARAEELVSGGLMILS--GQCLPDGVPK--ALTWQGVVIDMIGDCLMDMAKQGITTKEKI
         :..:.::.: :.:   :.  :: : .  .. :.     ...  . :.. :: : .::.
ATAP22 RCRSKEMVSAGRMVLIILGREGPDHVDRGNSFFWE-----LLSRSIADLVAQGETEEEKL
              230       240       250            260       270     

            280       290       300       310             320      
K18L3. ELFSLPIYIPHISEFKAEIERNENFSIETMEKISHPMDYKPLTN-DF-----ITSMFRAI
       . ... .: :  .:...:.... .: .: .: .    : :  :. :.     ...  ::.
ATAP22 DSYDMHFYAPSADEIEGEVDKEGSFELERLEMLEVKKD-KGNTEGDISYGKAVAKTVRAV
         280       290       300       310        320       330    

        330       340       350        360       370     
K18L3. LNTIIEEHFGDGVVNELFDRFAKKLNKYPIDF-KRCKKYVNYFIVLKRK 
        .... .:::. ....::: . . ..    .. :.  . ... .::..: 
ATAP22 QESMLVQHFGEKILDKLFDTYCRMVDD---ELAKEDIRPITFVVVLRKKL
          340       350       360          370       380 

Library scan:  0:00:00  total CPU time:  0:00:00