SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.P2 (Universal genetic code) : 39 aa
 vs  library
 searching atfca76 library

    851 residues in     1 sequences
The best scores are:                              s-w
ATFCA76, 851 bases, 14D7 checksum.                 (851) 148

>>ATFCA76, 851 bases, 14D7 checksum.                 (851 aa)
Smith-Waterman score: 148;   51.282% identity in 39 aa overlap

ATFCA7 MLSRFNIHQPFKRCKFRFFLRSIGNPDTILVESCSSSSCSSPEPSLVRSDYLTKPSDQDQ
               10        20        30        40        50        60

ATFCA7 IFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP
               70        80        90       100       110       120

ATFCA7 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS
              130       140       150       160       170       180

ATFCA7 MMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMF
              190       200       210       220       230       240

ATFCA7 KDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTLTSLI
              250       260       270       280       290       300

ATFCA7 SMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWI
              310       320       330       340       350       360

ATFCA7 TFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRS
              370       380       390       400       410       420

ATFCA7 MPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDV
              430       440       450       460       470       480

ATFCA7 ARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMK
              490       500       510       520       530       540

ATFCA7 LAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICASGSR
              550       560       570       580       590       600

                                               10        20        
K11J9.                                 NPPEEMVKKEKSRAKFAENAIHIIPFVL
                                       .:  .  :.:::: .:.::.::.::..:
ATFCA7 VLDHFPATSRSPPRSQSVTAMEDDVELLLPRYDPNSQAGKREKSRFRFSENVIHLIPLIL
              610       620       630       640       650       660

       30                                                          
K11J9. LACALVLWLFS                                                 
       : :. .::: :                                                 
ATFCA7 LLCVAILWLSSYSVNISQSSFFNFACSLSYTANRCFRSFQPSFLPRCLNYKIGAKRKRKY
              670       680       690       700       710       720

ATFCA7 AFLLECSCHSDMLFILLLIWKLMNYLSLLSRYGHNEWSRSTGMVVFNYKDCNNTLQRTEG
              730       740       750       760       770       780

ATFCA7 NRGLGYPEATELAGQFEMTSNIPPAIAHSSLDAGAKVILTTEAVVPATKTRKLSAERSEA
              790       800       810       820       830       840

ATFCA7 RRFVHHDTPSS
              850 

Library scan:  0:00:00  total CPU time:  0:00:00