SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.17 (Universal genetic code) : 338 aa
 vs  library
 searching yup8h126 library

    391 residues in     1 sequences
The best scores are:                              s-w
YUP8H126, 391 bases, BD7 checksum.                 (391) 804

>>YUP8H126, 391 bases, BD7 checksum.                 (391 aa)
Smith-Waterman score: 804;   39.628% identity in 323 aa overlap

                                                               10  
K11J9.                                                 MGYNYVSLIVTI
                                                                   
YUP8H1 MKIISLSISIGIAIIAVLASKTLFKTHPEAFGIKAISYSFKKSLCDHHHHHHHHHHHHHR
               10        20        30        40        50        60

             20          30        40        50        60          
K11J9. LLVVITSPVVFGNDAAP--IPENKGRIEQWFNTNVKQNGRGHFKTITEAINSVRAGN--T
                    :  :  ::       ...   : .::  .: :.  :...:  ::   
YUP8H1 HKPSDTKRKVSICDDFPKNIPPLDTDTTSYLC--VDKNGCCNFTTVQSAVDAV--GNFSQ
               70        80        90         100       110        

       70        80        90       100       110        120       
K11J9. RRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTA-AQYGTVDSATLIVLSD
       :: .: :. :.  :::.: ..:: ::: :.   . ..... :: .  ::   ::. :...
YUP8H1 RRNVIWINSGI--EKVVIPKTKPNITLQGQGFDITAIAWNDTAYSANGTFYCATVQVFGS
        120         130       140       150       160       170    

       130       140        150       160       170       180      
K11J9. YFMAVNIILKNSAPMPD-GKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFK
        :.: :: . : ::.:  :   ::::...::.:...:: .: :.: :::. :: : :.::
YUP8H1 QFVAKNISFMNVAPIPKPGDV-GAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFK
          180       190        200       210       220       230   

        190       200       210               220        230       
K11J9. DCYIEGTFDFIFGSGRSLYLGTQL----NVVGDGIR-V---ITAHAGKSAA-EKSGYSFV
       ::::.:..:::::...:::   ..    : .. : . :   .::. :.:.  :.::.:::
YUP8H1 DCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTAN-GRSSKDENSGFSFV
           240       250       260       270        280       290  

       240       250       260       270        280       290      
K11J9. HCKVTGTGTGIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQE-NREAGRDKTVFYGEYKCT
       .: . :::  ..:::.:  . .::.. : :..:. : ::.. : . .:: :.:::::.:.
YUP8H1 NCTIGGTGH-VWLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFN-DPSRDATIFYGEYNCS
            300        310       320       330        340       350

        300       310       320       330        
K11J9. GTGSHKEKRVKYTQDIDDIEAKYFISLGYIQGSSWLLPPPSF
       : :.   ::. :.: ... ..  .:. ..:.:..::      
YUP8H1 GPGADMSKRAPYVQKLNETQVALLINTSFIDGDQWLQFSDL 
              360       370       380       390  

Library scan:  0:00:00  total CPU time:  0:00:00