SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.16 (Universal genetic code) : 219 aa
 vs  library
 searching yif0_yeast library

    285 residues in     1 sequences
The best scores are:                              s-w
YIF0_YEAST, 285 bases, 7CA checksum.               (285) 330

>>YIF0_YEAST, 285 bases, 7CA checksum.               (285 aa)
Smith-Waterman score: 330;   35.204% identity in 196 aa overlap

YIF0_Y MELSSPSKKTTTSPINIPGGNRDNLIIGPHSHSFKTDPFSSNNSSLLSKISTNPSLESPF
               10        20        30        40        50        60

                                             10         20         
K11J9.                               MADQIEIQRMN-QDLQEPLAEI--MPS---
                                       .: ... .:  :.  :  :.  : :   
YIF0_Y SSKSLLDCSPVQAVKKSLESEAKTHSLDEETNEQTDVKILNIADF--PTDELILMISALL
               70        80        90       100         110        

                30         40        50         60        70       
K11J9. --VLTA---MSYLLQRVS-ETNDNLSQKQKPS-SFTGVTKPSISIRSYLERIFEYANC--
         ..::    . . :.:: ::.:.:     :  .: : . : :.. .::::: .:  :  
YIF0_Y NRIITANDETTDVSQQVSDETEDEL---LTPILAFYGKNVPEIAVVQYLERIQKY--CPT
      120       130       140          150       160       170     

          80        90                   100       110       120   
K11J9. SYSCYIVAYIYLDRFVK------------KQPFLPINSFNVHRLIITSVLVSAKFMDDLS
       . . ..   .:.::. :            :: :. ..: :.:::.::.: . .::..:. 
YIF0_Y TNDIFLSLLVYFDRISKNYGHSSERNGCAKQLFV-MDSGNIHRLLITGVTICTKFLSDFF
           180       190       200        210       220       230  

           130       140       150       160       170       180   
K11J9. YNNEYYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLF
       :.:  :::::::: .:.: :::.::.   :.: :.:  ...:  .: .            
YIF0_Y YSNSRYAKVGGISLQELNHLELQFLILCDFKLLVSVEEMQKYANLLYKFWNDQ       
            240       250       260       270       280            

           190       200       210         
K11J9. LEPSSFKISSKTKLVMYPHEEDSLSTHHNKKQLAAA

Library scan:  0:00:00  total CPU time:  0:00:00