SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.15 (Universal genetic code) : 186 aa
 vs  library
 searching pmsr_brana library

    257 residues in     1 sequences
The best scores are:                              s-w
PMSR_BRANA, 257 bases, 54C checksum.               (257)1000

>>PMSR_BRANA, 257 bases, 54C checksum.               (257 aa)
Smith-Waterman score: 1000;   74.074% identity in 189 aa overlap

PMSR_B MLSIVASPPVISAVSLSKPLQSLAKAALSLSKRAKPTSPFPKTARSISVYKSPMNNLFTR
               10        20        30        40        50        60

                          10        20        30        40         
K11J9.         MDP---SPIAQVIDDEAPAPGNQFTQFGAGCFWSVELAYQRVPGVTQTEVGY
                ::   : :::  ::..:.::.::.::::::::..:::::::::::.:::::
PMSR_B LGFGSRPQPDPAASSAIAQGPDDDVPSPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGY
               70        80        90       100       110       120

      50        60        70        80        90       100         
K11J9. SQGITHDPSYKDVCSGTTNHAEIVRVQYDPKECSYQSLLDLFWSKHDPTTLNRQGNDVGT
       :.:.. .:.:.:::: ::.: ::::::::::: :..::::.::..:::::::::::::::
PMSR_B SHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGT
              130       140       150       160       170       180

     110       120       130        140       150       160        
K11J9. QYRSGIYFYNPEQEKLARESLERHQQQV-DRKVVTEILPAKKFYRAEEHHQQYLSKGGRF
       .::::::::. ::::::::..:. ::.. .::.::::::: ::::::..:::::.::::.
PMSR_B RYRSGIYFYTDEQEKLAREAMEK-QQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRM
              190       200        210       220       230         

      170       180      
K11J9. GLKQSTEKGCNDPIRCYG
       ::.::.::::::::::::
PMSR_B GLSQSAEKGCNDPIRCYG
     240       250       

Library scan:  0:00:00  total CPU time:  0:00:00